Search Results for "genetic algorithm" - Page 3

Showing 226 open source projects for "genetic algorithm"

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  • 1
    ESTReMo

    ESTReMo

    An evolutionary simulator of transcription regulatory networks

    ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds.
    Downloads: 0 This Week
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  • 2

    Evolutionary Nursery

    A simple genetic algorithm for numerical optimization

    Evolutionary nursery is a result for my passion for developing genetic algorithms. I implemented this simple GA in 2008. This is especially intended for numerical optimization problems.
    Downloads: 0 This Week
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  • 3

    Grammatical Optimization

    A java based framework for grammatical evolution.

    This project is a result for my curiosity for how grammatical evolution (GE) works. Eventually, I made this wrapper for GE that should work with any numerical optimization algorithm. So the idea behind GE is that it takes production rules for computer programs using a context free grammar in Backus Naur form. The production rules can be used to evolve computer programs by running an algorithm such as a genetic algorithm or a particle swarm optimizer in the background.
    Downloads: 0 This Week
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  • 4

    FamSeq

    Variant calling on the basis of pedigree information

    ...FamSeq accommodates de novo mutations and can perform variant calling at chromosome X. To accommodate variations in data complexity, FamSeq consists of three distinct implementations of the Mendelian genetic model: the Bayesian network algorithm, Elston-Stewart algorithm and Markov chain Monte Carlo algorithm. To make the software efficient and applicable to large families, we parallelized the Bayesian network algorithm that copes with pedigrees with inbreeding loops without losing calculation precision on an NVIDIA® graphics processing unit.
    Downloads: 2 This Week
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  • 5

    SimpleFB_GA

    a simple genetic algorithm written in FreeBasic

    a FreeBasic-written Genetic Algorithm code is here deployed
    Downloads: 0 This Week
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  • 6

    HfT GA RCPSP

    Genetic Algorithm for the RCPSP

    Downloads: 0 This Week
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  • 7

    NEAT Visualizer SFML

    A NEAT Implementation and Visualization System

    Evolves neural networks using the Neuro-Evolution of Augmenting Topologies (NEAT) technique. A separate visualization system uses another genetic algorithm to evolve images of the otherwise dimensionless networks so their structure can be observed.
    Downloads: 0 This Week
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  • 8

    VariantMaster

    Extract causative variants for monogenic and sporadic genetic diseases

    ...To improve the identification of the variants from HTS, we developed VariantMaster, an original program that accurately and efficiently extracts causative variants in familial and sporadic genetic diseases. The algorithm takes into account predicted variants (SNPs and indels) in affected individuals or tumor samples and utilizes the row (BAM) data to robustly estimate the conditional probability of segregation in a family, as well as the probability of it being de novo or somatic. In familial cases, various modes of inheritance are considered: X-linked, autosomal dominant, and recessive (homozygosity or compound heterozygosity). ...
    Downloads: 0 This Week
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  • 9

    niGA

    Heterogenous Multiprocessor Scheduling Using Genetic Algorithms

    Implementation of task scheduling using Genetics algorithm for heterogeneous parallel programming
    Downloads: 0 This Week
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  • 10
    Bin Packing with Genectic Algorithm

    Bin Packing with Genectic Algorithm

    Bin Packing problem solved using Genectic Algorithm

    This project contains a solution for a Bin Packing problem solved using Genectic Algorithms. The code in the project was created as a solution for a problem in a combinatorial optimization class at the Univeridade Federal do Rio Grande do Sul (UFRGS - Brasil) in 2007.
    Downloads: 0 This Week
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  • 11

    OBSOLETE s-ga

    genetic algorithm

    Obsolete. Moved to the new Project 'sgena'
    Downloads: 0 This Week
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  • 12

    Evochumps

    Evolving recursive artificial neural networks in a simulation.

    ...It has a built-in evolutionary algorith to let the brains evolve conditoned to selective pressure. The program's interface allows you to manipulate all kinds of parameters of both the simulation, the genetic algorithm, and each particular RNN in real time.
    Downloads: 0 This Week
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  • 13

    PyGAO

    Genetic Algorithm Optimization for Python

    A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module.
    Downloads: 0 This Week
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  • 14

    ABM-Calibration-SensitivityAnalysis

    Codes and Data for Calibration and Sensitivity Analysis of ABM

    ...<http://jasss.soc.surrey.ac.uk/xx/x/x.html> Methods/Techniques used are: a. Parameter fitting: 1. Full Factorial Design 2. Simple Random Sampling 3. Latin Hypercube Sampling 4. Quasi-Newton Method 5. Simulated Annealing 6. Genetic Algorithm 7. Approximate Bayesian Computation b. Sensitivity Analysis: 1. Local SA 2. Morris Screening 3. DoE 4. Partial (Rank) Correlation Coefficient 5. Standardised (Rank) Regression Coefficient 6. Sobol' 7. eFAST 8. FANOVA Decomposition Have also a look on our other projects: http://www.uni-goettingen.de/de/315075.html
    Downloads: 0 This Week
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  • 15
    ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes
    Downloads: 0 This Week
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  • 16

    Model Based Test Generator

    Model Based Test Generator from UML

    The purpose of this project is creating test cases from uml statemachine and Class diagram with OCL constraint. We use forward search strategy to creating abstract test cases and using genetic algorithm for creating test data.
    Downloads: 0 This Week
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  • 17
    NNBrain

    NNBrain

    A free, open source collection of neural network based AI agents.

    NNBrain is a free and open source collection of artificial intelligence agents. These agents have applications in video games, research, business, and more. The included agents function in both discrete and continuous action and state spaces.
    Downloads: 0 This Week
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  • 18

    Tetris AI

    A try to demonstrate an AI module based on doubled genetic algorithm.

    Downloads: 0 This Week
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  • 19
    OpenAIL

    OpenAIL

    Open Artificial Intelligence Library

    [Open Artificial Intelligence Library]. This library main goal is to provide a tool box to those who want to use algorithm such as neural network or genetics Algorithm and all algorithms that are commonly within the Artificial Intelligence field.
    Downloads: 0 This Week
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  • 20

    AEvolution

    Artificial life game

    Artificial life game using a genetic algorithm in a simple 2D world.
    Downloads: 0 This Week
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  • 21

    Reactor Breeder

    A Genetic Algorithm for Reactors in StarMade

    This software uses a genetic algorithm to "evolve" reactor designs for Schema's space-simulation game, Star-Made (http://star-made.org/). One of the more unique aspects of the game is that ship power management is not as simple as filling a cube with power generation blocks. This mechanism leads to difficulties in getting maximal power generation out of such reactors.
    Downloads: 0 This Week
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  • 22

    GAET

    Genenitc Algorithm : Educational Tool

    The project consists of several parts : A simple framework dedicated to quick implementation of problem resolution algorithms using genetic algorithms ; Some problem resolution algorithms using genetic algorithms ; A graphical interface dedicated to the testing and learning of genetical algorithms.
    Downloads: 0 This Week
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  • 23

    libfgen

    Library for optimization using a genetic algorithm or particle swarms

    libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported.
    Downloads: 1 This Week
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  • 24
    QuasiRecomb

    QuasiRecomb

    Probabilistic inference of viral Quasispecies

    Please get the binary latest version at https://github.com/armintoepfer/QuasiRecomb/releases Description: RNA viruses are present in a single host as a population of different but related strains. This population, shaped by the combination of genetic change and selection, is called quasispecies. Genetic change is due to both point mutations and recombination events. We present a jumping hidden Markov model that describes the generation of the viral quasispecies and a method to infer its parameters by analysing next generation sequencing data. We offer an implementation of the EM algorithm to find maximum a posteriori estimates of the model parameters and a method to estimate the distribution of viral strains in the quasispecies. ...
    Downloads: 0 This Week
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  • 25

    Genetic Polynomials

    genetic algorithm to approximate a set of points with polynomial

    genetic algorithm to approximate a set of points with polynomial
    Downloads: 0 This Week
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