Open Source Java Algorithms - Page 4

The subgraph matching problem (subgraph isomorphism) is NP-complete. Previously, we designed an exact subgraph matching (ESM) algorithm for dependency graphs using a backtracking approach (http://esmalgorithm.sourceforge.net). We further designed an approximate subgraph matching (ASM) algorithm that is capable of detecting approximate subgraph matching based on a subgraph distance. Assume that the graph G and the subgraph Gs have m and n vertices, and km and kn edges respectively, the total worst-case algorithm complexity is O(m^n * n(n-1)/2 * km * log m). This Java implementation implements our ASM algorithm. See README file: https://sourceforge.net/projects/asmalgorithm/files/ If you use our ASM implementation to support academic research, please cite the following paper: Haibin Liu, Lawrence Hunter, Vlado Keselj, and Karin Verspoor. Approximate Subgraph Matching-based Literature Mining for Biomedical Events and Relations. PLOS ONE, 8:4 e60954, 2013.

Test of Artificial Life

Toolbox for Java developers. Includes right now only a multi-layered extensible cache system but will grow depending on requirements.

Awakener aims to provide a Java library for solving practical, real world optimisation problems by means of genetic algorithms (turnkey algorithms for >= 90% of industry problems). Awakener extends Sleepwalker with specific algorithms.

Balie - BAseLine Information Extraction (in Java) This project is not maintained anymore.

A tool to extract taxonomy from OWL ontology, translate it into Bayesian Nets and integrate uncertainty knowledge into result BNs.

A paint program where the canvas is the visual cortex of a simple kind of artificial intelligence. You paint with the mouse into its dreams and it responds by changing what you painted gradually. There will also be an API for using it with other programs as a general high-dimensional space. Each pixel's brightness is its own dimension. Bayesian nodes have exactly 3 childs because that is all thats needed to do NAND in a fuzzy way as Bayes' Rule which is NAND at certain extremes. NAND can be used to create any logical system. In this early version, I'm still working on edge detection and its understanding of the same shapes at different brightnesses. This will be a module of the bigger Human AI Net project and will be used for adding realtime intuitive high dimensional intelligence in audio and visual interactions with the user.

Beagle is Java open source framework for running and managing nondeterministic algorithms such as genetic algorithms for solving complex problems. Beagle is fully modular and maintains whole history of algorithm progress for further analysis.

Bebops ("Belief Base Operations") provides semi-revision, contraction and kernel operators for an OWL-backed Belief Base.

BigAl is a free open source and platform independent software for calculating really BIG numbers. It supports not only standard arithmetic, but also exact period determination, predefined factorials, fibonacci with seeds, factorization, nth root, etc

This project contains a solution for a Bin Packing problem solved using Genectic Algorithms. The code in the project was created as a solution for a problem in a combinatorial optimization class at the Univeridade Federal do Rio Grande do Sul (UFRGS - Brasil) in 2007.

BinBase is a software for the automatic analysis of Massspec data from LECO GC-Tofs. All code and documentation has been moved to the google code site of this project: https://code.google.com/p/binbase/ And support is provided by the company coding and more, which can be reached under: contact@codingandmore.org

This project is a highly flexible implementation of the well known bin packing algortihms: next fit, first fit, best fit, worst fit. The elements and bins may have any number of dimensions.

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the following paper: Ehsan Emadzadeh, Azadeh Nikfarjam, and Graciela Gonzalez. 2011. Double Layered Learning for Biological Event Extraction from Text. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistic

It moves by itself inside networks like virus infection & plagues, it is being written to solve computer virus problem drastically and responsibly. It is legal, free and open for public domain to improve W3 ICT Security.

Blubber system is an Eclipse RCP application for distributed systems modeling. Designed for university researches and inlcudes: task graph editor; graph transformation tools; graph modelling on distributed system; real-time modelling on GerdaFramework.

Bricks4J is a set of common tools, utils and classes for Java, aiming to ease development for a widespread kind of tasks.

The mathematical morphology have different applications on Image processing, it represent one processing non lineal sample. We show the CIDEFORM software as result of all mathematical morphology techniques.

A Color Management System library implement by Java language.

CRUSH is a pioneering reduction and imaging suite for many astronomical cameras operating at far-infrared, submillimeter and millimeter wavelengths, such as SHARC-2, SCUBA-2, LABOCA, GISMO, or SOFIA/HAWC+ (to name a few).

CSGraph is a simple graph library. It provides the most popular algorithms to create and manipulate graphs.

Continuous wavelet transform library

Calamari is a collection of Java APIs for implementing genetic algorithms, neural networks, and vehicle simulation. It is still being designed and developed.

The Catalsyt Framework is a refinement on the MVC framework. It provides greater focus on user business workflow rather than application workflow. It's goal is to enable business analysis and developers to work closer.