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The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics
Jenetics is an advanced GeneticAlgorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function.
C++ class to generate biologically plausible genetic codes
The "GeneticCode" C++ class is designed to generate versions of the geneticcode subject to the requirements of the three major models of the geneticcode origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life).
This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the geneticcode.
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Java API for implementing any kind of Genetic Algorithm and Genetic Programming applications quickly and easily. Contains a wide range of ready-to-use GA and GP algorithms and operators to be plugged-in or extended. Includes Tutorials and Examples.
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Molevolve is a Java library for running a GeneticAlgorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.