Search Results for "sourceforge.net/projects/winpython/files/winpython_3.8/3.8.10.0/winpython64-3.8.10.0.7z" - Page 12

POSA (Perl Objects for Sequence Analysis) provides an easy-to-use perl interface to handling raw ABI sequence trace files. For example: fasta can be extracted, sequence contigs can be build and putative SNPs and SBE primers can be easily generated.

An Evolution Simulator of Single Cells in a Pond. This shows a crosssection of water with sun shining from above. A single cell is dropped in and has various genes. The cells multipy and evolve. See Files above for download and screenshot.

For interactive clustering and visualization, Cluster and TreeView by Mike Eisen are great. XCluster by Gavin Sherlock solves the problem of clustering large numbers of files. Now slcview allows you to script generation of cluster and tree images.

This projects intends to develop a complete distributed peer-to-peer environment for running heuristic optimization, modelling, artificial life, etc applications. This involves a network engine, libraries and different user interfaces. All this in java.

RmscopII is a Tcl/Tk script responsible to redirect protein structure files (PDB files) or RasMol scripts to multiple RasMol sessions. It can be used as a web browser helper application or as a standalone program.

A python library for handling and analyzing biological sequence annotations as described in GFF files (General Feature Format). The library is intended to be a complete framework for this file format.

...BioSap selects unique oligos for microarrays by detecting user-defined parameters and running parallel instances of Featurama and Blast on compute engines, producing xml output files.

The ultimate goal of this project is to create a Java based DNA viewer that is both flexible and extendable. The initial phase will involve the design and implementation of a framework that can be used either with this project or other similar projects.

FreePM is an opensource physicians practice management / electronic medical record application. The company providing support for FreePM nolonger exists. You may consider TORCH http://sourceforge.net/projects/op-torch/ or one of the other FOSS EMR's.

For a summary and user's guide, please see the Wiki page: https://sourceforge.net/p/psfc/wiki/Home/ The Wiki page can also be accessed via the top toolbar.

...The program prompts for a character string, and the number of times that string should be present in each read, then pulls out the data. Motifs can either be consecutive or uncoupled from each other across the read, and analysis endpoints include read number and percentage tables, compiled bam files with only motif-containing reads, or bam files with motif-containing reads together with their paired end.

Software and systems that currently support the data processing, annotation and Genbank submission pipelines for viral projects at JCVI.

cel2fr is a perl script that can be used to convert Affymetrix CEL files into a format matching an Illumina Final Report. The primary use of this tool is to work in concert with the CNV analysis tool CNVision (www.cnvision.org), but its use is ideal for meta-studies combining multiple datasets. Current version is not yet functional.

CTM, an acronym for Closure Task Manager, is a generic Web based project management system used to manage tasks and the project team for one or more genome finishing (Closure) projects.

A set of tools to process and analyze Fasta files. This project is inscribed in the field of Proteomics.

The SchemaWalker is a Java application able to read a any schema and produce XForms web pages for user selected nodes grouped into webpages to allow editing of XML data files.

PubMed Central browser. Source code: http://github.com/dualword/dualword-pmc/