Showing 199 open source projects for "git:/git.code.sf.net/p/docfetcher/code"

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  • 1
    PRIDE: PRoteomics IDEntifications database. Please note that the PRIDE project has relocated to http://code.google.com/p/ebi-pride
    Downloads: 0 This Week
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  • 2
    Chemical Evaluation Framework (CEF) is a molecular structure based software to assist in hazard assessment. Download requires Java 6 update 1. Source code is contained in jar files. Download contains GSH reactivity plugin.
    Downloads: 0 This Week
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  • 3
    RepeatFinder is a command line tool for generating non-overlapping matches of microsatellite DNA from FASTA format code.
    Downloads: 0 This Week
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  • 4
    Manuelito is a Java tool for decrypting posttranslational modification (PTM) patterns of proteins based on MALDI mass spectrometry spectra. It was built for analysing the 'histone code' but it can be applied to any other highly modified protein.
    Downloads: 0 This Week
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    Junie, the AI coding agent by JetBrains

    Your smart coding agent

    Junie is an AI-powered coding agent developed by JetBrains designed to enhance developer productivity by integrating directly into popular IDEs such as IntelliJ IDEA, PyCharm, and Android Studio. It supports developers by assisting with code completion, testing, and inspections, ensuring code quality and reducing debugging time.
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  • 5
    Cellular Automata simulator. Native code (fast) and modular design: update rule, topology, time, measurement, initialization are independant. No GUI (for now...): configuration file (commented default automatically generated) overridable by command line.
    Downloads: 0 This Week
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  • 6
    JChemPaint Applet and Swing Application
    The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
    Downloads: 3 This Week
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  • 7
    Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
    Downloads: 0 This Week
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  • 8
    Sight provides a friendly interface to create and connect agents for bioinformatics. The workflow supports multiple responses to a single request, structure transforms, filters and request history access.Can talk with ordinary http servers (get and post)
    Downloads: 0 This Week
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  • 9
    Set of Java packages to apply Genetic Algorithms to any kind of problem. Various genetic operators are implemented and an example shows of how the system could be applied to digital circuit evolution.
    Downloads: 0 This Week
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  • 10
    Mister Model is a code generation system. It takes a UML model expressed as XMI and generates source code specifically designed to work in a cross-platform web service environment. It fixes the legendary 'Serialization Failed' messages in web services
    Downloads: 0 This Week
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  • 11
    Pymerase is a tool intended to generate a python object model, relational database, and an object-relational model connecting the two. However it has been extended to also output webpages and can be easily extended to output whatever else you might like.
    Downloads: 0 This Week
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  • 12
    openevo is a project started to find out about behaviour of evolutionary generated machine code. It implements a certain set of CPU instruction codes and a few interrupts for interaction with the runtime environment.
    Downloads: 0 This Week
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  • 13
    Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.
    Downloads: 0 This Week
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  • 14
    The purpose of this project is to make available a variety of tools written in Python.
    Downloads: 0 This Week
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  • 15
    Jaybird is java-language based, source & xml & codebyte class inter-converting tool. You can write your Envolvable Code with it; You can make your computer write program itself; You can run program without compiling time; You can manage source as data
    Downloads: 0 This Week
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  • 16
    The Molecular Modeling Templates, MMT is a C++ class library for molecular simulation applications. MMT serves as a code basis that can be easily extended and modified to perform Monte Carlo and molecular dynamics simulations.
    Downloads: 0 This Week
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  • 17
    Virtual machine/emulator; "holding pen" for self-replicating programs written in custom RISC assembly-like language, evolving via random point mutations and periodic fitness-based cullings. Inspired (like Avida) by Thomas Ray's alife simulator, Tierra
    Downloads: 0 This Week
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  • 18
    Distributed Genetic Programming SRVM (Simple Risc Virtual Machine) Distributed function approximator of nonlinear functions with automatic induction of machine code.
    Downloads: 0 This Week
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  • 19

    Paired Sequence File Comparison

    Fast validation of FASTQ files containing paired-end reads

    For a summary and user's guide, please see the Wiki page: https://sourceforge.net/p/psfc/wiki/Home/ The Wiki page can also be accessed via the top toolbar.
    Downloads: 0 This Week
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  • 20
    A software framework to support distributed evolutionary software development. It dynamically creates a network of nodes that can run a pre-distributed source code (e.g. artificial lifeforms). The results of the calculation will be sent back to the maste
    Downloads: 0 This Week
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  • 21
    Project provides some Tcl/Tk procedure for manipulating Biology data. And, attributed to the clarity of the Tcl code, it is also useful for education.
    Downloads: 0 This Week
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  • 22
    Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
    Downloads: 0 This Week
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  • 23

    Dualword-PMC

    PMC browser

    PubMed Central browser. Source code: http://github.com/dualword/dualword-pmc/
    Downloads: 0 This Week
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  • 24
    ** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html
    Downloads: 0 This Week
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