Showing 48 open source projects for "atc simulation python"

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  • 1
    PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.
    Downloads: 0 This Week
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  • 2
    NetBuilder' - Apostrophe
    NetBuilder' is a tool for building, visualizing, and simulating multi-layered biological networks, structured as hierarchical Petri-nets. It has a built-in stochastic simulator, but also provides easy access to other simulation and analysis.
    Downloads: 0 This Week
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  • 3
    Biologic Institute's Stylus simulation software suite. (See the SVN repository for source code.)
    Downloads: 0 This Week
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  • 4
    Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.
    Downloads: 0 This Week
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  • 5
    ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
    Downloads: 1 This Week
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  • 6
    """ E-Cell's source code repository has moved to GitHub! https://github.com/ecell The development of E-Cell now continues on GitHub. The Subversion repository was abandoned. """ E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
    Downloads: 1 This Week
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  • 7
    Downloads: 0 This Week
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  • 8
    A python/C++ framework for Bayesian phylogenetic analysis.
    Downloads: 0 This Week
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  • 9
    SINAM -- Simulation Interface for Network Analysis of Metabolism
    Downloads: 0 This Week
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  • 10
    A collection of python classes for computational ecology and evolutionary biology.
    Downloads: 0 This Week
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  • 11
    BARNACLE
    BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
    Downloads: 0 This Week
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  • 12
    This project is started out of the idea to simulate simple creatures like game of live. The goal is to build up an multi processor/host environment to simulate the building of simple live in given world environments.
    Downloads: 0 This Week
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  • 13
    Brian is a new simulator for spiking neural networks available on almost all platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists.
    Downloads: 0 This Week
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  • 14
    A small simulator for Mendelian genetics, genetic drift, natural selection and random mutations, built on matplotlib and wxpython. A graph will be generated that traces the distribution of genotypes at successive generations.
    Downloads: 0 This Week
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  • 15
    "Blue Planet" is a research project simulating the behaviour and darwinian evolution of unicellular lifeforms, each controlled by its own genetic program. Moreover, "Blue Planet Inhabitants" are suited for swarm intelligence and swarm research.
    Downloads: 0 This Week
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  • 16
    Artificial plants laboratory.
    Downloads: 1 This Week
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  • 17
    This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).
    Downloads: 0 This Week
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  • 18
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 3 This Week
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  • 19
    Cellogica is a cellular logic analysis tool. It incorporates sequential logic and finite state machine to elucidate the relationship between transcription factors and corresponding gene expression.
    Downloads: 0 This Week
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  • 20
    Simulator of virtual animals made up of biological neural networks for research in the Computational Neuroscience field.
    Downloads: 0 This Week
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  • 21
    NeuroPython is a Python module created for easy simulation of neural networks.
    Downloads: 0 This Week
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  • 22
    Python program devoted to study the relationship between cells during inmune response. It is based on a 3D periodic boundary conditions grid where cells see each other and react according to certain movement, growth and interaction rules.
    Downloads: 0 This Week
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  • 23
    Ducking is a software who is providing simulation of probable docking between two proteins using rigid body monte carlo method. It is written in python and uses the libraries wxPython, VTK, SciPy and BioPython.
    Downloads: 0 This Week
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