Showing 377 open source projects for "medical"

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  • 1
    Synthea Patient Generator

    Synthea Patient Generator

    Synthetic Patient Population Simulator

    SyntheaTM is an open-source, synthetic patient generator that models the medical history of synthetic patients. Our mission is to provide high-quality, synthetic, realistic but not real, patient data and associated health records covering every aspect of healthcare. The resulting data is free from cost, privacy, and security restrictions, enabling research with Health IT data that is otherwise legally or practically unavailable.
    Downloads: 1 This Week
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  • 2
    OpenMRS

    OpenMRS

    Open source Health IT for the planet

    OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.
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    Downloads: 500 This Week
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  • 3
    dcm4che is an implementation of DICOM and IHE actors in Java. Homepage: http://www.dcm4che.org, Google Group: http://groups.google.com/group/dcm4che?hl=en, Wiki: http://www.dcm4che.org/confluence, Issue Tracking: http://www.dcm4che.org/jira
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    Downloads: 1,389 This Week
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  • 4
    Grassroots DICOM

    Grassroots DICOM

    Cross-platform DICOM implementation

    Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files.
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    Downloads: 212 This Week
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  • 5

    BBMap

    BBMap short read aligner, and other bioinformatic tools.

    This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and...
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    Downloads: 419 This Week
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  • 6
    The Chemistry Development Kit
    The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java. The main home page of the CDK is now at: http://cdk.github.io
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    Downloads: 37 This Week
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  • 7
    gVirtualXRay

    gVirtualXRay

    Virtual X-Ray Imaging Library on GPU

    gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python, R, Ruby, Tcl, C#, Java, and GNU Octave.
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    Downloads: 16 This Week
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  • 8
    CleverPsych  Practice Management

    CleverPsych Practice Management

    FREE software to manage your psychology or allied health solo practice

    CleverPsych is FREE software for psychologists and other allied health professionals who run their own practices. We have been using CleverPsych in our own practice in Australia since 2007. The system enables you to record your clients, appointments, services, organisations and referring doctors. The aim is to make operations like generating standard letters, claiming from the government and insurance companies, and reporting income, much easier. Look in the Files tab for...
    Downloads: 23 This Week
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  • 9

    Stanford Data Miner

    Tools for integration and analysis of heterogeneous immunological data

    An extensive description of this system is published in the Journal of Translational Medicine (http://www.translational-medicine.com/). In brief, the system consists of two main web applications, a data integration app and a data exploration app. The data integration app is a fully custom Java "Web 2.0" product called Sherpa. Sherpa uses Seam, a platform integrating Asynchronous JavaScript and XML (AJAX), JavaServer Faces (JSF), the Java Persistence API (JPA), and Enterprise Java Beans...
    Downloads: 0 This Week
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  • 10
    GNU Gluco Control (GGC) is diabetes management application. It helps managing user's daily data, food data. Has graphs, statistics, printing, diabetes devices support (meter, pump, CGMS). It works on any platform supporting at least Java 5 (1.5). Our repo moved to GIT (click on tab Git Code), Lowest supported Java now is 1.8 and project code base is in process of redesign (updating libraries and ways how application is built and run). IMPORTANT: Project was moved to GitHub:...
    Downloads: 12 This Week
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  • 11
    123VCF

    123VCF

    An Intuitive and Efficient Tool for VCF file filtration

    ...BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
    Downloads: 2 This Week
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  • 12

    SDC

    SDC facilitates development of dist. systems of medical devices.

    OpenSDC is a set of libraries that form a communication framework to facilitate the development of distributed systems of medical devices in high-acuity environments. It is based on the upcoming SDC standard, which is specified by the IEEE in IEEE Std 11073-20702-2016 (Point-of-care medical device communication Part 20702: Medical Devices Communication Profile for Web Services), IEEE Std 11073-10207-2017 (Point-of-care medical device communication Part 10207: Domain Information and Service Model for Service-Oriented Point-of-Care Medical Device Communication), and P11073-20701 (IEEE Draft Standard for Service-Oriented Medical Device Exchange Architecture & Protocol Binding). ...
    Downloads: 3 This Week
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  • 13

    Dike-ED

    Simulator for medical emergency departments

    Discrete-event simulator for medical emergency department resource allocation.
    Downloads: 0 This Week
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  • 14

    ImageJ2x

    Java Image Processing Program

    ImageJ2x is medical image processing program inspired by NIH Image for the Macintosh. It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. There can be many image formats including TIFF, GIF, JPEG, BMP, DICOM, PNG, FITS and "raw" and ... Read and supports "stacks" (stack), a series of images that share a single window.
    Downloads: 3 This Week
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  • 15

    OpenVigil

    Open pharmacovigilance data extraction, mining and analysis tool

    OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting...
    Downloads: 20 This Week
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  • 16
    sRNAWorkbench

    sRNAWorkbench

    The UEA sRNA Workbench

    A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data
    Downloads: 2 This Week
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  • 17
    Beasties

    Beasties

    Defeat all the beasties to claim victory!

    Beasties is an OS-independent game written in Java (as of ver2.0.0, prior versions written in Python). The object is to defeat a number of monsters without dying. You have a knife, a gun, extra ammo, and a few medical supplies to help you
    Downloads: 1 This Week
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  • 18
    dsam
    The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
    Downloads: 0 This Week
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  • 19

    ICD 10 Disease Viewer

    Simplifies viewing of ICD 10 codes and descriptions by medical workers

    Helps medical personnel search and become familiar with ICD 10 disease codes and descriptions
    Downloads: 0 This Week
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  • 20

    ASR for Medical Reporting

    Automatic speech recognition system for medical reporting in spanish.

    This is a functional prototype of automatic speech recognition system for medical reporting in Spanish using CMU Sphinx4 ASR toolkit. This ASR use pre-trained acoustic model and context dependent language model in nuclear medicine diagnostics.
    Downloads: 0 This Week
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  • 21
    MedRecReader

    MedRecReader

    Convert Tricare PDF table into MS Excel

    Medical Record Reader (MedRecReader) is a tool designed to simplify coping Tricare medical history from a PDF Table to a manageable format such as a Microsoft Excel table.
    Downloads: 0 This Week
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  • 22
    OpenBoxes

    OpenBoxes

    OpenBoxes is an open-source supply chain management system.

    ...It could also be used to manage stock at dispensaries, but would likely not be used to track patient-level transactions (e.g. administration and dispensing). It is also not intended to manage durable medical equipment, nor to provide detailed information about vendors.
    Downloads: 4 This Week
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  • 23
    HL7 Inspector

    HL7 Inspector

    HL7 Inspector is a tool for managing HL7 messages

    The HL7 Inspector project has moved to Bitbucket. https://bitbucket.org/crambow/hl7inspector All new releases can be found there. The web-based version can still be found at www.hl7inspector.com
    Downloads: 3 This Week
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  • 24
    PPIXpress

    PPIXpress

    specific protein interaction networks from transcript expression

    Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal...
    Downloads: 1 This Week
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  • 25

    toothache

    A conversion utility from proprietary TIF exams to DICOM standard

    This application is able to convert TIF radiology exams to DICOM objects
    Downloads: 0 This Week
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