Search Results for "code visualization"
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Showing 20 open source projects for "code visualization"
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. -
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Ultrashort Pulse Propagator
A powerful simulation for designing femtosecond lasers and amplifiers.
This is a simulation package developed for numerical simulation of ultrashort pulse propagation in optical media and pulse generation from mode-locked lasers. Although the code is primarily intended for investigations of fiber links, fiber amplifiers and fiber lasers, it can be applied to any other setting for which the governing equiations are valid. The physics included in the code is based on a generalized nonlinear Schrödinger equation, including higher order dispersion, stimulated Raman... -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. -
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NTU RGB-D
Info and sample codes for "NTU RGB+D Action Recognition Dataset"
The “NTU RGB+D” repository provides access to a large-scale dataset for human action recognition (and its extension, NTU RGB+D 120). The dataset includes multiple modalities (RGB video, depth sequences, infrared video, 3D skeletal joint data) captured with multiple Kinect v2 cameras simultaneously. The repository also contains MATLAB / Python demo scripts for loading, visualizing, and processing skeleton data, mapping between modalities, and handling dataset structure. Multi-modal action... -
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5
VRN
Code for "Large Pose 3D Face Reconstruction
The VRN (Volumetric Regression Network) repository implements the “Large Pose 3D Face Reconstruction from a Single Image via Direct Volumetric CNN Regression” method. Instead of explicitly fitting a 3D model via landmark estimation and deformation, VRN treats the reconstruction task as volumetric segmentation: it learns a CNN to regress a 3D volume aligned to the input image, and then extracts a mesh via isosurface from that volume. The network is unguided (no 2D landmarks as intermediate).... -
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PsyExTool
psychophysical experiment control, data collection and visualization
PsyExTool is a Psychophysical Experiment Toolbox in Matlab/Octave dedicated to control experiment, collect and visualize data. PsyExTool is aimed to create a tool that enables to couple the methods with visual or audio stimulus presentation modules. At present the program allows to use adjustment, constant stimulus and adaptive PSI psychophysical methods. The parameters of the stimulus and psychophysical method is adjusted in a single graphical user interface. The responses are collected... -
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CAM
Class Activation Mapping
...The method involves modifying a CNN model slightly (e.g., using global average pooling before the final layer) to produce a weighted combination of feature maps as the class activation map. Integration with existing CNNs (with light modifications). Sample scripts/examples using standard architectures. The repo provides example code and instructions for applying CAM to existing CNN architectures. Visualization of discriminative regions per class. -
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Quadrotor
Quadrotor control, path planning and trajectory optimization
This MATLAB-based repository contains implementations of quadrotor control systems, path planning, and trajectory optimization algorithms developed as part of an advanced robotics course at the University of Pennsylvania. It includes PD controllers, path planning via Dijkstra and A* algorithms, and trajectory optimization (minimum snap/acceleration). Run code: change trajectories in file control/runsim.m and run. See quadrotor_dynamics.pdf for dynamic modeling of the quadrotor. See control/controller.m for implementation of the PD controller. Visualization below. Desired (blue) vs Actual (red). -
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Machine Learning Homework
Matlab Coding homework for Machine Learning
The Machine-Learning-homework repository by user “Ayatans” is a collection of MATLAB code intended to solve or illustrate assignments in machine learning courses. It includes implementations of standard machine learning algorithms (such as regression, classification, etc.), scripts for data loading and preprocessing, and evaluation routines (e.g. accuracy, error metrics). Because it is structured as homework or practice material, the code is likely intended more for didactic use than for... -
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OpenFace
A state-of-the-art facial behavior analysis toolkit
OpenFace is an advanced facial behavior analysis toolkit intended for computer vision and machine learning researchers, those in the affective computing community, and those who are simply interested in creating interactive applications based on facial behavior analysis. The OpenFace toolkit is capable of performing several complex facial analysis tasks, including facial landmark detection, eye-gaze estimation, head pose estimation and facial action unit recognition. OpenFace is able to... -
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MATLAB Robotics
MATLAB sample codes for mobile robot navigation
...It provides practical algorithmic implementations such as A*, RRT, Kalman filters, particle filters, and SLAM, making it a valuable resource for students, researchers, and developers learning or prototyping robotics applications. The code is written to be accessible and easy to adapt, enabling experimentation with both classical and modern robotics techniques. By using MATLAB’s visualization and numerical capabilities, the repository offers intuitive demonstrations of algorithms in action. As an open resource, it encourages contributions and serves as a foundation for building and testing robotics concepts in simulation. -
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Marine Mammal Acoustic DCL
Advanced acoustic detection, classification and localization
Advanced detection, classification and localization (DCL) of marine mammals and passive acoustic monitoring (PAM). Code is being developed as Matlab routines, interfaces for Ishmael (http://www.bioacoustics.us/ishmael.html), and in other formats. -
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MatlabFunc
Matlab codes for feature learning
...The repository brings together a wide range of utility scripts, algorithms, and implementations that serve as building blocks for research and development. These functions cover areas such as matrix operations, optimization, data processing, and visualization, making them broadly applicable across different research domains. The project is intended to provide reusable and adaptable MATLAB code that can save time for researchers and students working on experimental or applied projects. By consolidating these tools in one place, MatlabFunc serves as a practical reference and toolkit for both academic and engineering purposes. ... -
14
igafem
Open source 3D Matlab Isogeometric Analysis Code
Isogeometric analysis (IGA) is a fundamental step forward in computational mechanics that offers the possibility of integrating methods for analysis into Computer Aided Design (CAD) tools and vice versa. The benefits of such an approach are evident, since the time taken from design to analysis is greatly reduced leading to large savings in cost and time for industry. The tight coupling of CAD and analysis within IGA requires knowledge from both fields and it is one of the goals of the... -
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Flexible Brain Graph Visualizer
Matlab code to visualise brain graphs from connectivity matrices
This very configurable script allows you to plot a 3D (MNI space) visualisation of a brain graph, with edges represented by cylinders and vertices represented by spheres. To aid orientation, a cortical mesh can be added, as can convex hull outlines. The colouring and sizing scheme is fully configurable for both edges and vertices. You can see some example output in... -
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GoIFISH
for the semi-automated analysis of IFISH images
GoIFISH has been developed for the analysis of IFISH (Immunofluorescence + Fluorescence in situ Hybridisation) images, performing nuclear, membrane and spot detection. Users can manually edit segmentation results, perform background adjustments, construct heatmaps, topology maps, and perform cell classification. All results can be exported for further analysis. GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment.... -
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Matlab Community Detection Toolbox
CDTB is a MATLAB toolbox which performs Community Detection
...Furthermore, CDTB is designed in a parametric manner so that the user can add his own functions and extensions. The CDTB can be used in at least three ways. The user can employ the functions from the MATLAB command line; or he can write his own code, incorporating the CDTB functions; or he can use the Graphical User Interface (GUI) which automates the community detection and includes some data visualization options. -
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FluxModules
Module Computation for Metabolic Networks
Genome Scale Metabolic Networks are complex systems, Modules help to break them down and hence ease understanding and algorithmic complexity. FluxModules is a toolbox with code for module detection and module visualization. -
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MICROMECHANICS
A collection of lecture notes and accompanying code on micromechanics
The collection MICROMECHANICS (micromechanics.zip) includes: (1) lecture notes (microbook.pdf) on the analysis of heterogeneous materials and homogenization, and (2) source codes (microcode.tar.bz2) that accompany the computational exercises in Part II of the notes. Instructions on using the codes are given in the README file of each exercise. Further instructions can be found in the file microcode.tar.bz2. The MATLAB codes are used for visualization, evaluating analytical bounds... -
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MATLAB GUI and code to map cell distribution around smooth spherical microcarriers beads from laser scanning confocal microscope images
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