Showing 116 open source projects for "python data analysis"

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  • 1

    noise-free-cnv

    program for analyzing and manipulating DNA microarray data

    CNV calling software may produce false-positive calls due to imperfect source material. Direct inspection of the microarray data with the noise-free-cnv software helps to appreciate the quality of the data and to identify artificial calls. With noise-free-cnv it is possible to visualize individual datasets, to compare different datasets and to perform simple transformations. The visualization and the suppression of genomic waves, the comparison of two datasets by subtraction and the...
    Downloads: 2 This Week
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  • 2

    Patient Monitor

    Patient monitor showing actual and simulated data

    In intensive care units (ICU) patients vital signs are monitored. This is an attempt to build an interface which can show external and simulated medical data, to mimic these patient monitors. The motivation for this project are my experiments with building medical devices.
    Downloads: 2 This Week
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  • 3

    WaveSorter

    A powerful, versatile tool for offilne spike analysis and sorting

    WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform...
    Downloads: 3 This Week
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  • 4
    Xpose - an S/R based population PK/PD model building aid for NONMEM.
    Downloads: 6 This Week
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  • 5

    cancergrid-tma

    A web-based application for the management of tissue microarray images

    ...The application enables the user to navigate a grid of TMA core images within a slide, zoom and pan around an image, and enter a score constrained to a specific scoring system. The submitted scores are scored in the eXist open source database, in an XML format, which is compatible with existing TMA standards, and thus allow the data to be archived and re-used in future analysis.
    Downloads: 0 This Week
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  • 6
    sigTOOL
    sigTOOL provides a user-extendable signal analysis environment for processing electrophysiological data within MATLAB. Neuron spike-train, + spectral and time-domain analyses are built in. See http://dx.doi.org/10.1016/j.jneumeth.2008.11.004
    Downloads: 0 This Week
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  • 7
    PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
    Downloads: 0 This Week
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  • 8
    STI analysis and forecasting

    STI analysis and forecasting

    Analysis of drug resistance and epidemiology of STI (STD) in Russia

    The STIanafor is a tool for spatio-temporal data vizualization, analysis and forecast of incidence of sexually-transmitted diseases and drug resistance of pathogens in the Russian Federation. Currently supports gonorrhoea (N. gonorrhoeae) and syphilis (T. pallidum). A set of real data for testing is provided.
    Downloads: 0 This Week
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  • 9

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 17 This Week
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  • 10
    The Community Health Information Tracking System (CHITS) integrates public health vertical program information and presents a unified view of data for decision-making.
    Downloads: 1 This Week
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  • 11
    A sleep research experiment manager, EDF (EEG, EMG etc) with power spectrum analysis and visualisation, and Process S ('sleep pressure') estimation following Achermann et al (1993).
    Downloads: 0 This Week
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  • 12
    Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.
    Downloads: 1 This Week
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  • 13
    PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.
    Downloads: 0 This Week
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  • 14

    mfBox

    A Matlab toolbox for performing model-free analysis of fMRI data

    The mfBox is a Matlab toolbox for performing model-free analysis of multivariate data sets. It also plugs into SPM used for the analysis of multivariate brain recordings such as fMRI, SPECT and PET data sets. This project is looking for a new maintainer!
    Downloads: 1 This Week
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  • 15
    Actigraph analysis software
    Downloads: 0 This Week
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  • 16
    CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact system admin at http://cnv-webstore.uantwerpen.be for installation scripts
    Downloads: 0 This Week
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  • 17
    PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.
    Downloads: 0 This Week
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  • 18
    """ E-Cell's source code repository has moved to GitHub! https://github.com/ecell The development of E-Cell now continues on GitHub. The Subversion repository was abandoned. """ E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
    Downloads: 0 This Week
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  • 19
    Using the Mean Machine, even very large EEG data sets can be analyzed (artifact detection, evoked potentials, frequency analysis, ect.). It is a Matlab GUI application, which can also be run via the command line without GUI-support.
    Downloads: 0 This Week
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  • 20
    This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
    Downloads: 0 This Week
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  • 21
    qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
    Downloads: 0 This Week
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  • 22
    A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
    Downloads: 1 This Week
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  • 23
    The NetEpi project is developing open-source, network-enabled tools for epidemiology and public health practice.
    Downloads: 0 This Week
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  • 24
    EEG-Holter - Designed for analysis of long-term EEG - Holter. Java developed, it supports medical and logbook anotations, epileptic events data, graphics and EDF files. UNIFESP © 2009 - Aristides Tavares dos Santos, Prof. Dr. Carlos J R Campos.
    Downloads: 1 This Week
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  • 25
    A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.
    Downloads: 0 This Week
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