Showing 3 open source projects for "bash shell script"

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  • 1
    MAF

    MAF

    Bash Framework to combine many preprocessing and alignment tools

    DNA and RNA nucleotide sequences are an ubiquitous element of all biological cells and are serving on one hand as a comprehensive library of capabilities for the cells and on the other as an impressive regulatory system to control cellular function. The presented multi-alignment framework (MAF) should give researchers a simple sequence alignment platform as a functional template, flexible enough to adjust all steps but also comprehensive enough to join many different tools and custom...
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  • 2
    polypy
    **(9 march 2016) this project is continued on github : http://jaapkroe.github.io/polypy ** Python script to analyze (shortest-path) rings in structures read from xyz-files. It can be useful for example to identify defects in crystal structures or molecules.
    Downloads: 0 This Week
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  • 3
    NaRIBaS

    NaRIBaS

    Unix-based preparation and analysis toolbox for molecular simulations

    ...Concepts for efficiently storing and analysing large files in conjunction with graphical visualization and numerical data processing are presented in a Manual. A documented script collection that allows reproducing all simulations and analysis results presented in the Doctoral thesis of the author.
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