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MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.

mtsieve is a framework wrapped around primesieve to distribute prime numbers to worker classes to do work with those prime numbers. The "mt" means that it is multi-threaded. The "sieve" means that the framework is typically used to eliminate candidate terms with small from a set of numbers. The numbers remaining after using mtsieve can then be used by programs such as llr and pfgw to test those numbers for primality. Another usage could be to use those prime numbers to test each for a...

...TomoJ is written in Java, the computations are multithreaded and reconstruction can be performed on CPU or GPU (OpenCL). registration is described in: Journal of Structural Biology: X. 2020, Volume 4. "Improvements on marker-free images alignment for electron tomography" C.O.S. Sorzano et al. https://doi.org/10.1016/j.yjsbx.2020.100037. BMC Bioinformatics. 2009 Apr 27;10:124."Marker-free image registration of electron tomography tilt-series." C.O.S. Sorzano et al. reconstruction part was described in: BMC Bioinformatics. 2007 Aug 6;8:288. ...