Search Results for "python data analysis" - Page 2

Showing 246 open source projects for "python data analysis"

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  • 1

    TA-Lib.git: Technical Analysis Library

    Mirror of the TA-Lib project using a Git repository

    This project is intended to provide Git access to the code of the original project, TA-Lib, which uses Subversion. It is intended for system integrators wishing to use TA-Lib in their Git-managed project through Git submodules or subtrees. No actual development is being done here; all development happens in the original project.
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  • 2

    PINCIS

    PINCIS.pl is a Perl bioinf. script to analyze PICS data

    PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be...
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  • 3
    Software, information, data sets and documentation for the Web as Corpus community.
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  • 4

    ModST

    A tool to search post-translational modifications in a blind mode

    ModST (pronounced as modest) is a tool to search post-translational modifications (PTMs) in mass spectrometry data in an unrestrictive manner. It can search for hundreds of modification without any user provided information for variable modifications. Due to data level parallelization implemented through perl it is fast, portable and easy to use to identify and analyse PTMs in MS/MS data.
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    The Secure And Reliable File Transfer Solution That You Control.

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  • 5

    mapska

    The Murder Accountability Project's Serial Killer Algorithm

    A much improved Linux/Perl implementation of the Murder Accountability Project's Serial Killer Algorithm. This module was tested with the "SHR76_19.csv" available from www.murderdata.org/p/data-docs.html. This module provides functions to prepare the data, upload to a database and view the identified clusters. Download SHR76_19.csv (23/03/2021) - https://www.dropbox.com/s/ye37woe6et05qgs/SHR76_19.csv.zip?dl=1 For information on this algorithm and the Murder Accountability Project...
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  • 6
    Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
    Downloads: 4 This Week
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  • 7
    XMLTV (http://xmltv.org/) is for grabbing TV listings primarily from websites. It has a grabber for Danish Television that grabs from http://tv.tv2.dk, but here we maintain serveral others. You can find documentation on http://niels.dybdahl.dk/xmltvdk
    Downloads: 0 This Week
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  • 8
    LiVES

    LiVES

    LiVES is a Video Editing System. It is designed to be simple to use, y

    LiVES mixes realtime video performance and non-linear editing in one professional quality application. It is designed to be simple to use, yet powerful. It is small in size, yet it has many advanced features. Using LiVES, you can start editing and making video right away, without having to worry about formats, frame sizes, or framerates. It is a very flexible tool which is used by both professional VJ's and video editors - mix and switch clips from the keyboard, use dozens of realtime...
    Downloads: 12 This Week
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  • 9

    COHCAP

    City of Hope CpG Island Analysis Pipeline

    COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download
    Downloads: 1 This Week
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  • 10

    Microarray assosiated motif analyzer

    Cis-element prediction tool from microarray data

    We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this...
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  • 11

    VecText

    Converting text to a structured representation

    VecText is an application that converts raw text to a structured format suitable for various data mining software. The application is written in interpreted programming language Perl. A part of the functionality is realized by external modules (e.g., Lingua::Stem::Snowball for stemming). The graphical user interface enables user-friendly software employment without requiring specialized technical skills and knowledge of a particular programming language, names of libraries and their...
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  • 12
    IPAC-NG is the iptables/ipchains based IP accounting package for Linux. It collects, summarizes, and nicely displays IP accounting data. Ipchains and (preferably) iptables are supported. Logs are stored in files, a gdbm or a PostgreSQL database.
    Downloads: 0 This Week
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  • 13
    The OpenGEREA is a open enrichment analysis framework for gene expression regulation data analysis.
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  • 14
    ggplot2-book

    ggplot2-book

    ggplot2: elegant graphics for data analysis

    The ggplot2-book repository contains the source for ggplot2: Elegant Graphics for Data Analysis, written by Hadley Wickham. The book explains the theory and application of the ggplot2 package in R for data visualization, guiding readers through its layered grammar of graphics approach. It serves as both a practical guide and conceptual reference for building advanced plots and mastering ggplot2.
    Downloads: 1 This Week
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  • 15
    ChIP-Seq
    The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
    Downloads: 0 This Week
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  • 16
    scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
    Downloads: 8 This Week
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  • 17
    PumpedUp

    PumpedUp

    Performance monitoring and logging software for Linux and Windows.

    PumpedUp gathers system performance data on a second by second basis and creates real time or static graphical web pages. It can quickly point out maximized resources on a system. It also has options for sending data to Redis / Logstash for analysis, or Nagios for alarming. PumpedUp runs an insecure web server on port 8080 by default and requires you to provide your own security for that port.
    Downloads: 0 This Week
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  • 18
    Sagacity

    Sagacity

    Security Assessment Data Management and Analysis Tool

    We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow...
    Downloads: 1 This Week
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  • 19

    miARma-Seq

    a A suite designed to study mRNAs, miRNAs and circRNAs

    ...It brings together well-established software in a single bundle, allowing a complete analysis from raw data. All the capabilities can be easily and simultaneously enabled at will, regardless the step in the workflow.
    Downloads: 0 This Week
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  • 20
    __Alien Cipher

    __Alien Cipher

    A bespoke symmetric cipher.

    ...This code demo uses a 256bit rolling hash table (8x8bytes) at its heart to mix together pre-defined parameters in a way that allows the cipher to produce encoded output that is locked to a key of arbitrary length without padding. Based upon some random data points the cipher produces encoded output that is non-deterministic in nature, the same key and message will never produce the same output each time it's run. The cipher attempts to render output that is resistant to several types of analysis although this has yet to be proven. Please note that I make no claims to this being safe. ...
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  • 21
    CSBB-v3.0

    CSBB-v3.0

    CSBB - Computational Suite for Bioinformaticians and Biologists

    CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code.
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  • 22
    CSBB-v2.1 [CSBB-v3.0 is now available]

    CSBB-v2.1 [CSBB-v3.0 is now available]

    Computational Suite For Bioinformaticians and Biologists

    CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code.
    Downloads: 0 This Week
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  • 23

    BisSNP

    Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller

    ...It works for both of single-end and paired-end reads.Specificity and sensitivity has been validate by Illumina IM SNP array. In default threshold 30X data (Phred scale score > 20), it could detect 92.21% heterozygous SNPs with 0.14% false positive rate Cytosine calling is not only based on reference context, so it could detect non-reference cytosine context. Google group for help: http://goo.gl/zL7Nj
    Downloads: 3 This Week
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  • 24
    Perl Web Scraping Project

    Perl Web Scraping Project

    Perl Web Scraping Project

    ...It is a form of copying, in which specific data is gathered and copied from the web, typically into a central local database or spreadsheet, for later retrieval or analysis. Web scraping a web page involves fetching it and extracting from it.[1][2] Fetching is the downloading of a page (which a browser does when you view the page). Therefore, web crawling is a main component of web scraping, to fetch pages for later processing.
    Downloads: 0 This Week
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  • 25

    MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    ...MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples.
    Downloads: 0 This Week
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