Search Results for "annotation" - Page 2
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Showing 81 open source projects for "annotation"
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1
pytype
A static type analyzer for Python code
pytype is a static type analyzer that checks and infers types for Python code without executing it, catching errors at “compile time” and generating actionable diagnostics. It grew alongside Python typing at Google and can understand both inline annotations and unannotated code via powerful inference. The tool consumes stub files (.pyi) for the standard library and third-party packages (from typeshed and its own built-ins), enabling accurate checks even in large, mixed-quality codebases.... -
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AudioNotes
Extract audio and video content and organize it into a Markdown note
AudioNotes is an application (or proof-of-concept) that likely combines audio recording or playback with note-taking or annotation functionality — enabling users to record voice or audio and attach textual or timestamped notes, making it ideal for lectures, interviews, meetings, or personal memos. Such a tool offers a more expressive and flexible way to capture and revisit information: instead of just typed notes or raw audio, users get both audio context and structured notes. ... -
3
SAHI
A lightweight vision library for performing large object detection
A lightweight vision library for performing large-scale object detection & instance segmentation. Object detection and instance segmentation are by far the most important fields of applications in Computer Vision. However, detection of small objects and inference on large images are still major issues in practical usage. Here comes the SAHI to help developers overcome these real-world problems with many vision utilities. Detection of small objects and objects far away in the scene is a major... -
4
Lightly
A python library for self-supervised learning on images
...That's why - together with our community - we want to popularize the use of self-supervised methods to understand and curate raw image data. Our solution can be applied before any data annotation step and the learned representations can be used to visualize and analyze datasets. This allows selecting the best core set of samples for model training through advanced filtering. We provide PyTorch, PyTorch Lightning and PyTorch Lightning distributed examples for each of the models to kickstart your project. Lightly requires Python 3.6+ but we recommend using Python 3.7+. ... -
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5
Auto-CS
Automatic annotation of Cued Speech
Auto-CS is a Python program developed within the project AutoCuedSpeech: https://auto-cuedspeech.org. Auto-CS contains all the components dedicated to the automatic annotation of Cued Speech. This source code is not a standalone tool: it runs exclusively within SPPAS. It is integrated through the **spin-off** mechanism provided by SPPAS, which allows external code bases to remain separate while still being dynamically discovered and used by the main framework. See <https://auto-cuedspeech.org> for details about the related Research Project. ... -
6
SPPAS
SPPAS - the automatic annotation and analyses of speech
SPPAS is a scientific computer software package written and maintained by Brigitte Bigi of the Laboratoire Parole et Langage, in Aix-en-Provence, France. Available for free, with open source code, there is simply no other package for linguists to simple use in the automatic annotations of speech, the analyses of any kind of annotated data and the conversion of annotated files. SPPAS is able to produce automatically speech annotations from a recorded speech sound and its orthographic... -
7
Textinator
Internationalized highly customizable annotation and evaluation tool
Textinator is an open-source internationalized highly-customizable annotation and evaluation tool for Natural Language Processing (NLP) tasks. The tool offers a web interface with a user-friendly UI and supports a number of NLP tasks out of the box. The recommended way of deploying Textinator is through building a production version of the Docker container, as described in the Deployment guidelines. Note that the production version is most definitely more secure and reliable than the development version. ... -
8
Tokenized Text Aligner
Aligns tokens in two versions of a text with differing tokenization.
...It is intended for use in the preparation of annotated linguistic corpora, where differences in tokenization may arise (i) following corrections or modifications to the source text or (ii) through the creation of different layers of annotation (part-of-speech, treebank) requiring different tokenization. In its default implementation, it produces a human-readable CSV table associating tokens in text A with tokens in text B, and can also inject token-level annotation from text B to text A. The Aligner class on which the default implementation is based can be incorporated into more complex workflows. -
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miRge3
Comprehensive analysis of small RNA sequencing data
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User Interface (GUI). ... -
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10
pdf combiner merger converter splitter
PDF Combiner is a user-friendly, GUI-based tool built in
PDF Combiner is a user-friendly open source free to use, GUI-based tool for combining, pdf to excel, pdf to word, image to pdf, zip, unzip annotate and splitting PDF files. It is easy to use, supports multiple file insert and delete and process, and allows you to adjust the order of files before combining. -
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Adala
Adala: Autonomous DAta (Labeling) Agent framework
Adala is a data-centric AI framework focused on dataset curation, annotation, and validation. It helps AI teams manage high-quality training datasets by providing tools for data auditing, error detection, and quality assessment. -
12
Detic
Code release for "Detecting Twenty-thousand Classes
...Built on Detectron2, the repo includes configs, pretrained weights, and conversion tools to mix fully and weakly supervised sources. Detic is especially useful for applications where label space is vast and long-tailed, but dense bounding-box annotation is infeasible. -
13
doccano client
A simple client for doccano API
doccano-client is a simple client wrapper for the doccano API. We're introducing a newly revamped Doccano API Client that features more Pythonic interaction as well as more testing and documentation. It also adds more regulated compatibility with specific Doccano release versions. -
14
scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
15
sense2vec
Contextually-keyed word vectors
sense2vec (Trask et. al, 2015) is a nice twist on word2vec that lets you learn more interesting and detailed word vectors. This library is a simple Python implementation for loading, querying and training sense2vec models. For more details, check out our blog post. To explore the semantic similarities across all Reddit comments of 2015 and 2019, see the interactive demo. -
16
MITRE Annotation Toolkit
A toolkit for managing and manipulating text annotations
The MITRE Annotation Toolkit (MAT) is a suite of tools which can be used for automated and human tagging of annotations. Annotation is a process, used mostly by researchers in natural language processing, of enhancing documents with information about the various phrase types the documents contain. MAT supports both UI interaction and command-line interaction, and provides various levels of control over the overall annotation process. -
17
Reminiscence
Self-Hosted Bookmark And Archive Manager
Bookmark links and edit its metadata (like title, tags, summary) via web interface. Archive links to content in HTML, PDF or full-page PNG format. Automatic archival of links to non-html content like pdf, jpg, txt etc. i.e. Bookmarking links to pdf, jpg etc.. via the web interface will automatically save those files on the server. Supports archival of media elements of a web page using third-party download managers. Directory-based categorization of bookmarks. Automatic tagging of HTML... -
18
DensePose
A real-time approach for mapping all human pixels of 2D RGB images
...This enables detailed understanding of human shape, motion, and surface appearance directly from images or videos. The repository includes the DensePose network architecture, training code, pretrained models, and dataset tools for annotation and visualization. DensePose is widely used in augmented reality, motion capture, virtual try-on, and visual effects applications because it enables real-time 3D human mapping from 2D inputs. The model architecture builds on Mask R-CNN, using additional regression heads to predict UV coordinates that map image pixels to 3D surfaces. -
19
Fun4Me
A package for functional annotation for metagenomes
This package includes a few programs for rapid functional annotation for metagenomic sequences, including, 1) Gene prediction by FragGeneScan; 2) Similarity search by RAPSearch2; 3) Functional annotation in GO (Gene Ontology) and EC (Enzyme Commission) based on similarity search results; 4) From EC to metabolic pathway reconstruction by MinPath. Inputs: Just sequencing reads (or assemblies) Outputs: Protein-coding genes (or gene fragments); similarity search; functional annotations (in GO and EC); metabolic pathways. -
20
COCO Annotator
Web-based image segmentation tool for object detection & localization
...The annotation process is delivered through an intuitive and customizable interface and provides many tools for creating accurate datasets. Several annotation tools are currently available, with most applications as a desktop installation. Once installed, users can manually define regions in an image and creating a textual description. Generally, objects can be marked by a bounding box, either directly, through a masking tool, or by marking points to define the containing area. ... -
21
CBMPy
PySCeS Constraint Based Modelling
PySCeS CBMPy is a new platform for constraint based modelling and analysis. It has been designed using principles developed in the PySCeS simulation software project: usability, flexibility and accessibility. CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations. Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently... -
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TI2BioP allows mainly the calculation of topological indices (spectral moments) derived from inferred and artificial 2D structures of DNA, RNA and proteins being possible to carry out a structure-function correlation irrespective of sequence alignments. TI2BioP version 3.0 is a python platform with a graphical interface designed for Windows, Linux and Mac OS.
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23
LabelImg
Graphical image annotation tool and label object bounding boxes
...Virtualenv can avoid a lot of the QT / Python version issues. Build and launch using the instructions. Click 'Change default saved annotation folder' in Menu/File. Click 'Open Dir'. Click 'Create RectBox'. Click and release left mouse to select a region to annotate the rect box. You can use right mouse to drag the rect box to copy or move it. The annotation will be saved to the folder you specify. You can refer to the hotkeys to speed up your workflow. -
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3D ResNets for Action Recognition
3D ResNets for Action Recognition (CVPR 2018)
We uploaded the pretrained models described in this paper including ResNet-50 pretrained on the combined dataset with Kinetics-700 and Moments in Time. We significantly updated our scripts. If you want to use older versions to reproduce our CVPR2018 paper, you should use the scripts in the CVPR2018 branch. -
25
PPLine
SNP calling, annotation and gene/transcripts expression quantification
...PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results
