Search Results for "bbmap"
Sort By:
Showing 2 open source projects for "bbmap"
View related business solutions-
Software for managing apps and accounts | WebCatalogTurn websites into desktop apps with WebCatalog Desktop—your all-in-one tool to manage apps and accounts. Switch between multiple accounts, organize apps by workflow, and access a curated catalog of desktop apps for Mac and Windows.
-
Cycloid: Hybrid Cloud DevOps collaboration platformEnable your developers to do their best work and increase time-to-market speed with a leading DevOps and Hybrid Cloud platform.
-
1
BBMap
BBMap short read aligner, and other bioinformatic tools.
This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. -
2
metawatt
Binner for assembled metagenomes
...It also performs taxonomic assessment of binning quality (via diamond BLASTx). Created bins can be edited and exported as fasta. The Metawatt is implemented in Java SWING and minimally depends on Diamond, HMMer3.1, BBMap, Prodigal and the Batik library for the export of SVG graphics. Citation: Strous M, Kraft B, Bisdorf R, TegetMeyer H (2012) The binning of metagenomic contigs for microbial physiology of mixed cultures. Frontiers in Microbial Physiology and Metabolism 3:410. doi: 10.3389/fmicb.2012.00410
- Previous
- You're on page 1
- Next
