Search Results for "reader"

VIGOR (Viral Genome ORF Reader) is a perl application to predict protein sequences encoded in viral genomes. VIGOR determines the protein coding sequences by sequence similarity searching against curated viral protein databases. Please see the wiki to see list of all supported viruses. This work has been funded in whole or part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services under contract number HHSN272200900007C.

SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.

Lata is a file format to store CFD results, with special care for huge datasets. This project provides tools for manipulate and convert the lata files. This project is part of the VisIt plugin reader. The Snorky3D sofware is presented in the following conference communication: Visualisation of CFD computations: millions of particles in real time with Snorky3D Visu 2012, september 2012, Paris, France http://visu2012.imag.fr/articles/mathieu.pdf

...Ogles started out as a planning system for frame based stereotactic neurosurgery. Ogles(1) is discontinued. Release candidate (RC) is Ogles2b. Ogles is accompanied by a simple DICOM reader and NIfTI converting tool (Sdr2).

...Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement and its application to ordering in glassy hard sphere colloids. Soft Matter 9, 1447–1457 (2013). https://dx.doi.org/10.1039/C2SM27107A (http://arxiv.org/pdf/1301.7237.pdf)

SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos.

...It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology and developed by scientists from around the world, among others from OvGU, and the University of California, Berkeley.

A very simple command line tool to convert OSM files to Shapefiles. Written in Java. Think of it as a self-study project.

MERRYts is the Most Efficient Reader for Representing Your Terminology System. One GUI for all (medical) Terminology Systems

ScardFace is a python3k library for interfacing with smart cards, which supports Plug-and-Play readers inclusion and threading. It also offers classes for manipulating APDU cmds and resps, and use them in a transport-protocol-independent fashion.

PyAnnotation is a Python Library to access and manipulate linguistically annotated corpus files. Supported file formats are Kura XML, Elan XML and Toolbox files. A Corpus Reader API is provided to support statistical analysis within the NLTK.

Alpha test of an XML based HDF reader

Search and export numerics from any text/ascii file. Data sets (scalar, vector, matrix) are given unique names, based on file content. Results can be generated for Matlab, IDL, Scilab, Octave, XML, HTML A wrapper exists for direct usage from Matlab.

The Chemical Structures Project is a set of 3D structures of molecules in CML format. Each file contains also some physical properties, which can be access using a web browser or a CML file reader.

A open source, multiplatform, fractal generator and explorer. Includes Mandelbrot, Julia, Lambda and others popular formulas. Also includes formula reader to create new fractals. It can save PNG images. Requires Java Virtual Machine.

Magstripper is a magnetic card reader and decoder that takes raw waveform information from a magnetic audio head (soldered directly to a mono audio jack) and processes it via a mic input. It also includes a multi-user door lock access control system.

A collection of small utility programs to process geographic information and GPS data. Each program is written in Java and simple enough to be easy to understand. E.g. GTOPO30 to JPG, GLCC20 to JPG, GPX reader.

Read single-band NASA PDS (Planetary Data System) Image files in Python. Query header information and extract binary image data in a format suitable for PIL (Python Imaging Library). Works for Pathfinder and Mars Exploration Rover images, maybe others.

Displays text or information from a document by rapidly "flashing" short segments on the screen. This has also been called Rapid Serial Visual Presentation (RSVP), and is intended, experimentally, to aid with reading speed and comprehension.

WKB4J is a Java library designed to read the Well-Known Binary format from a database and transform this data into corresponding Java objects. It supports several different GIS toolkits (JTS, PostGIS, OpenMap...).

JavaGO is an Open Source Java library for the Game of GO (weiqi, baduk) analysis. Implements: base game classes, montecarlo simulations, SGF reader/writer, game variants, GTP, etc. Elegant interfaces/class design. Speed efficient w/small footprint. TDD.