Showing 21 open source projects for "data envelopment analysis package"

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  • 1
    SwiftVis

    SwiftVis

    Data Exploration for Swift and other N-body simulation

    This is a project that was started back in 2001 to help data analysis for a revision of Hal Levison's Swift planetary simulation framework. SwiftVis is a data exploration and visualization package written in Java that has a GUI which supports the creation of visual "dataflow programs" and can be used by non-programmers.
    Downloads: 0 This Week
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  • 2
    Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
    Downloads: 4 This Week
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  • 3

    BisSNP

    Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller

    Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. ...
    Downloads: 1 This Week
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  • 4

    MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    ...MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples.
    Downloads: 0 This Week
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  • 5
    CamBA is a Linux package for statistical analysis, by script/GUI, of neuroimaging data (fMRI/sMRI), developed at the Brain Mapping Unit, University of Cambridge. Non-parametric permutation-based statistics. Input images: 4D NiFTI files, output: HTML/
    Downloads: 1 This Week
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  • 6
    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,...
    Downloads: 0 This Week
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  • 7
    The Java Data Mining Package (JDMP) is a library that provides methods for analyzing data with the help of machine learning algorithms (e.g. clustering, classification, graphical models, neural networks, Bayesian networks, text processing, optimization).
    Downloads: 1 This Week
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  • 8
    Universal Java Matrix Package

    Universal Java Matrix Package

    sparse and dense matrix, linear algebra, visualization, big data

    The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large...
    Downloads: 0 This Week
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  • 9
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
    Downloads: 0 This Week
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  • 10

    SoNIA (Social Network Image Animator)

    Social Network Image Animator creates animations of network data

    SoNIA (Social Network Image Animator) is a Java-based package for visualizing dynamic or longitudinal network data and rendering it out as animations. The home page with examples is located at http://sonia.stanford.edu Documentation is at https://sourceforge.net/p/sonia/wiki/Main_Page/
    Downloads: 0 This Week
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  • 11
    Graphical Grammar Studio

    Graphical Grammar Studio

    An user friendly grammar tool for natural language processing tasks

    Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited...
    Downloads: 0 This Week
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  • 12

    Systems Glycobiology

    Glycosylation Network Analysis Toolbox (GNAT)

    ...For information about GNAT installation and usage, please see the GettingStarted.pdf file enclosed in the package. To cite GNAT: [1] Gang Liu, Apurv Puri and Sriram Neelamegham, Glycosylation Network Analysis Toolbox (GNAT): a MATLAB based environment for systems glycobiology, Bioinformatics 2013 29: 404-406
    Downloads: 0 This Week
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  • 13
    OpenForecast is a package of general purpose, forecasting models written in Java that can be applied to any data series. No knowledge of forecasting is required. Using this package, the most appropriate algorithm for your data will be selected.
    Downloads: 0 This Week
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  • 14
    The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
    Downloads: 0 This Week
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  • 15
    Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.
    Downloads: 0 This Week
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  • 16
    Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
    Downloads: 0 This Week
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  • 17
    jgnuplot is a Java library for interfacing with the gnuplot plotting package which outputs to X11, PostScript, PNG, GIF and other formats.
    Downloads: 0 This Week
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  • 18
    UDA stands for Universal Descriptive Algebra. It consists of a Java package handling universal algebras and relational structures as description systems.
    Downloads: 0 This Week
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  • 19
    Pattern recognition software package. It includes several classification and clustering algorithms. It can read data from a set of images, an ASCII file or a JDBC connection. A small TCP data server with its corresponding JDBC driver is included.
    Downloads: 0 This Week
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  • 20
    Data Mining in Time Series
    Downloads: 0 This Week
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  • 21
    FDTD Antenna Simulator is a complete software package for antenna analysis and design using the FDTD method.
    Downloads: 0 This Week
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