Search Results for "python framework" - Page 3
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Showing 158 open source projects for "python framework"
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MuPIF
Multi-Physics Integration Framework (MuPIF)
Multi-Physics Integration Framework (MuPIF) is an integration framework, that will facilitate the implementation of multi-physic and multi-level simulations, built from independently developed components. The principal role of the framework is to steer individual components (applications) and to provide high-level data-exchange services. Each application should implement an interface that allows to steer application and execute data requests. The design supports various coupling strategies,... -
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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PyMeG - Python Measurement GUI
Make your complex measurements in an easy graphical way
Inspired by the THz-Shaker (https://sourceforge.net/projects/hzdr/) PyMeG can be a more general and well structured framework as well as Graphical User Interface for measurements in several laboratories. -
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HZDR
Scripts and programs (e. g. THz-Shaker) for work in HZDR
Scripts for evaluation and whole programs for measurements from work in Helmholtz-Zentrum Dresden Rossendorf (www.hzdr.de). One main project was the THz-Shaker (incl. THz-LiveCam and THz-Viewer) as complete new measurement framework. See Code (https://sourceforge.net/p/hzdr/code/) for files. A special thing is the wrapped CsAPI for GaGe CompuScope cards (e. g. Octopus) into Python: https://sourceforge.net/p/hzdr/code/HEAD/tree/thzshaker/device/scope/csapi.py An example of usage can be found here: https://sourceforge.net/p/hzdr/code/HEAD/tree/thzshaker/device/scope/dualchannel/api.py -
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Taurus
A python based User Interface library.
The Taurus Project has *moved* to: https://github.com/taurus-org/taurus This SourceForge page is *outdated* and kept for historical reference only. Taurus is a python framework for control and data acquisition CLIs and GUIs in scientific/industrial environments. It supports multiple control systems or data sources: Tango, EPICS, ... New control system libraries and data sources can be integrated through plugins. -
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BayesRate
Bayesian estimation of diversification rates
BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175. -
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pyhard2, control hardware from python
An object-oriented framework for the development of instrument drivers
pyhard2 is an object-oriented framework to help in the development of instrument drivers. pyhard2 is proposed as an alternative to LabVIEW. Emphasis is given on serial drivers but the framework can be used with any socket. The source also contains the implementation of a PID controller and a setpoint ramp generator. The instrument drivers may further be incorporated in a GUI, using, e.g. PyQt or PySide. Threading is automatically taken care of. Furthermore, generic GUI (called... -
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Lute Tablature Toolkit for Gamera
Optical Music Recognition for Tablature Notations
A toolkit for the optical recognition of 16th century lute tablature prints. It is based on and requires the Gamera document image analysis framework (http://gamera.sf.net). -
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Gamera is a framework for the creation of structured document analysis applications by domain experts. It combines a programming library with GUI tools for the training and interactive development of recognition systems.
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The Modular toolkit for Data Processing (MDP) is a Python data processing framework. From the user's perspective, MDP is a collection of supervised and unsupervised learning algorithms and other data processing units that can be combined into data processing sequences and more complex feed-forward network architectures. From the scientific developer's perspective, MDP is a modular framework, which can easily be expanded.
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COFILOS
A Development Framework for Coldfire
Contains a framework for Coldfire MCUs like 52254. The framework supports a Command Line Interface (CLI) that may work from Serial port, USB or ENET. The framework uses Processor Expert and IDE requirement is MCU Eclipse 10.4 from Freescale. Includes the FunkOS Realtime Operating System by Funkenstein Software Consulting, available at http://funkos.sourceforge.net Mainly it is a support package for the development board Perseus, but I have ported also the RTOS to MCF52233DEMO... -
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openModeller is a complete C++ framework for species potential distribution modelling. The project also includes a graphical user interface, a web service interface and an API for Python.
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PyRate
Bayesian Estimation of Speciation and Extinction from Fossil Data
PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract). *Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual can be found here: https://github.com/dsilvestro/PyRate/tree/master/tutorials * -
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
...These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be applied to virtually any text collection, language, and MWE type. It is a command-line tool written mostly in Python. Its development started in 2010 as a PhD thesis but the project keeps active (see the SVN logs). ... -
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Stochastic Rule Builder (SRB)
Modeling framework for capturing positional and temporal dynamics
We present a modeling framework aimed at capturing both the positional and temporal behavior of transcriptional regulatory proteins. There is growing evidence that transcriptional regulation is the complex behavior that emerges not solely from the individual components, but rather from their collective behavior, including competition and cooperation. Our framework describes individual regulatory components using generic action oriented descriptions of their biochemical interactions with a... -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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Collective Mind Technology
plugin-based framework for systematic and reproducible experimentation
New version moved to http://github.com/ctuning/ck Collective Mind framework (cM) is an open-source plugin-based schema-free repository and infrastructure for collaborative, systematic and reproducible research and experimentation. This 3rd version (started in 2006) helps to implement, preserve, share and reproduce the whole experimental setup as connected modules and data. cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. For example, it... -
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise due to the high sequence similarity between related organisms. Further, the state of conservation of proteins between species can be correlated with their expression level which can lead to significant bias in results and interpretation. These challenges are similar but not identical to the challenges arising in... -
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fitGCP
Fitting genome coverage distributions with mixture models
Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for.... -
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RoboComp is a robotics framework providing a set of open-source, distributed, real-time robotic and artificial vision software components and the necessary tools to create and manage them.
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Raysect Python Raytracing Framework
A raytracing framework for optical/non-optical physics simulations
This project has migrated to github: https://github.com/raysect -
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Gadgetron
Medical Image Reconstruction Framework
Medical Image Reconstruction Framework -
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OverView
Optimization and visualization tool for CFD.
OVERVIEW is a framework for optimization that integrates the visualization of complex fluid solutions and geometries taking advantage of the high performance and cutting edge rendering techniques of modern graphic cards. -
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SocExplorer
SocExplorer, an open source System On Chip testing software/framework.
SocExplorer is an open source generic System On Chip testing software/framework. We write this software for the development and the validation of our instrument, the Low Frequency Receiver(LFR) for the Solar Orbiter mission. This instrument is based on an actel FPGA hosting a LEON3FT processor and some peripherals. To make it more collaborative, we use a plugin based system, the main executable is SocExplorer then all the functionality are provided by plugins. Like this everybody can provide...
