/result query optimized to remove merge join, will break oth

Allen Day — Tue, 23 Jan 2007 22:14:54 -0000

Query in:
/var/www/das2-chado-Hsa-17/lib/Bio/Das2/Source/Assay/Celsius.pm
line 95, and subsequent mangling of platform allows for direct join to the correct table in the netaffx schema, e.g. netaffx.hg_u133a_annot.

The problem with this is that previously a LEFT JOIN was being done against annot1. While this is fine for platforms that inherit from annot1 (i.e. LEFT JOIN will return no rows), this introduces an error when attempting to retrieve data from tables that do not inherit from annot1 (e.g. netaffx.mapping10k_xba131_annot).

This is going to be a bitch to fix. One route to explore is looking at the Pg catalog to see which parent table (i.e. annot1, annot2, or annot3), then formulating the query appropriately.

import netaffx schema generation and load code

Allen Day — Tue, 23 Jan 2007 21:51:06 -0000

Look at ~allenday/projects/netaffx/generate_schema.pl

Recent changes to bugs

/result query optimized to remove merge join, will break oth

import netaffx schema generation and load code