https://sourceforge.net/p/genseedhmm/activity/Recent activity for GenSeed-HMMenSun, 09 May 2021 19:18:51 -0000https://sourceforge.net/p/genseedhmm/code/ci/5e723ef77b963de482f2335b80f1f2b92dcfd874/Fixing the bug of the rl parameter in command line.LilianeSun, 09 May 2021 19:18:51 -0000https://sourceforge.net/p/genseedhmm/code/ci/5e723ef77b963de482f2335b80f1f2b92dcfd874/https://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadGenSeed-HMMSun, 09 May 2021 19:15:03 -0000https://sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v.%25201.0.26.pl/downloadGenSeed-HMMSun, 09 May 2021 19:14:02 -0000https://sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v.%201.0.26.pl/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadGenSeed-HMMFri, 15 Jan 2021 00:40:03 -0000https://sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v1.0.14.pl/downloadGenSeed-HMMFri, 15 Jan 2021 00:40:03 -0000https://sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v1.0.14.pl/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Tutorial%2520v1.3.pdf/downloadGenSeed-HMMFri, 15 Jan 2021 00:24:02 -0000https://sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Tutorial%20v1.3.pdf/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v1.0.11.pl/downloadGenSeed-HMMMon, 30 Apr 2018 12:36:02 -0000https://sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v1.0.11.pl/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v1.0.12.pl/downloadGenSeed-HMMMon, 30 Apr 2018 12:35:02 -0000https://sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_v1.0.12.pl/downloadhttps://sourceforge.net/p/genseedhmm/code/ci/92a406ac9f2de7a8245119b0307badc4cdec33e6/Comment/date fixesJ AlvesTue, 07 Nov 2017 20:40:32 -0000https://sourceforge.net/p/genseedhmm/code/ci/92a406ac9f2de7a8245119b0307badc4cdec33e6/https://sourceforge.net/p/genseedhmm/code/ci/4a2024f015d4e9f56685e068783c47f51abd24ef/Fix in version and update information.J AlvesWed, 18 Oct 2017 15:28:25 -0000https://sourceforge.net/p/genseedhmm/code/ci/4a2024f015d4e9f56685e068783c47f51abd24ef/https://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadGenSeed-HMMWed, 18 Oct 2017 13:42:02 -0000https://sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadhttps://sourceforge.net/p/genseedhmm/code/ci/8718c7b46370871e9bc9fdf18c822ce342f8595d/Fixes in handling of absent quality values when using -use_qualJ AlvesWed, 18 Oct 2017 11:33:50 -0000https://sourceforge.net/p/genseedhmm/code/ci/8718c7b46370871e9bc9fdf18c822ce342f8595d/https://sourceforge.net/p/genseedhmm/code/ci/d0cdb6b517d859f9e4a8f9696fccbaf882a976f9/Changed line endings to UNIXJ AlvesThu, 13 Oct 2016 13:02:53 -0000https://sourceforge.net/p/genseedhmm/code/ci/d0cdb6b517d859f9e4a8f9696fccbaf882a976f9/https://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadGenSeed-HMMThu, 13 Oct 2016 13:00:04 -0000https://sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadhttps://sourceforge.net/p/genseedhmm/code/ci/ab29cf83ad1248bf565558ef6a9d9b7271621142/Changed bowtie2 command to include -x, which is...J AlvesThu, 13 Oct 2016 12:56:39 -0000https://sourceforge.net/p/genseedhmm/code/ci/ab29cf83ad1248bf565558ef6a9d9b7271621142/https://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_106.pl/downloadGenSeed-HMMWed, 30 Mar 2016 13:23:02 -0000https://sourceforge.net/projects/genseedhmm/files/old_versions/genseed-hmm_106.pl/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/genseedhmm/files/genseed-hmm_STABLE_1011.pl/downloadGenSeed-HMMWed, 30 Mar 2016 13:16:04 -0000https://sourceforge.net/projects/genseedhmm/files/genseed-hmm_STABLE_1011.pl/downloadhttps://sourceforge.net/p/genseedhmm/code/ci/67575c10083a97607acb34d562d6d69d6995a4f6/Implemented custom -align_threshold (equal to 0...J AlvesTue, 29 Mar 2016 21:23:07 -0000https://sourceforge.net/p/genseedhmm/code/ci/67575c10083a97607acb34d562d6d69d6995a4f6/https://sourceforge.net/p/genseedhmm/code/ci/b93e32039827f10d7f965aba98a52afdc7827aa8/Fixed crash when there was no final contigs fil...J AlvesTue, 29 Mar 2016 18:00:19 -0000https://sourceforge.net/p/genseedhmm/code/ci/b93e32039827f10d7f965aba98a52afdc7827aa8/https://sourceforge.net/p/genseedhmm/code/ci/171097ed633804fc328fd6081253cbf0acea7e2b/Fixed problem with final contig check. Provisory.J AlvesTue, 29 Mar 2016 15:11:44 -0000https://sourceforge.net/p/genseedhmm/code/ci/171097ed633804fc328fd6081253cbf0acea7e2b/https://sourceforge.net/p/genseedhmm/code/ci/bf2e788fc7dde9d3eba869a024eb723fc0732044/Changed -aux_starter routines to use the intern...J AlvesMon, 28 Mar 2016 21:09:04 -0000https://sourceforge.net/p/genseedhmm/code/ci/bf2e788fc7dde9d3eba869a024eb723fc0732044/https://sourceforge.net/p/genseedhmm/code/ci/822c111f623c412804298154fb6115182bb00171/Fixed duplicated word in log file message.J AlvesMon, 28 Mar 2016 19:50:24 -0000https://sourceforge.net/p/genseedhmm/code/ci/822c111f623c412804298154fb6115182bb00171/https://sourceforge.net/p/genseedhmm/code/ci/8ba77881d4e93ec23b7df279189b346bef768d0a/Commented out commands for detailed stack trace.J AlvesMon, 28 Mar 2016 19:21:25 -0000https://sourceforge.net/p/genseedhmm/code/ci/8ba77881d4e93ec23b7df279189b346bef768d0a/https://sourceforge.net/p/genseedhmm/code/ci/9281256c79aa777ed55b0acd38e1b5479e6e01ea/Improved error handling and messages to the scr...J AlvesMon, 28 Mar 2016 19:17:20 -0000https://sourceforge.net/p/genseedhmm/code/ci/9281256c79aa777ed55b0acd38e1b5479e6e01ea/https://sourceforge.net/p/genseedhmm/code/ci/c190f9b825b18b7c092463265fadfc68b8fa07d3/Added message with number of reads converted fr...jotalvesMon, 21 Mar 2016 21:22:51 -0000https://sourceforge.net/p/genseedhmm/code/ci/c190f9b825b18b7c092463265fadfc68b8fa07d3/https://sourceforge.net/p/genseedhmm/code/ci/b2ba3025a407251006d97b34a90a3877aa37ea3a/Changed ABySS executable name to ABYSS instead ...jotalvesTue, 15 Mar 2016 15:23:53 -0000https://sourceforge.net/p/genseedhmm/code/ci/b2ba3025a407251006d97b34a90a3877aa37ea3a/https://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/tutorial_files.tgz/downloadGenSeed-HMMThu, 12 Nov 2015 01:31:03 -0000http://sourceforge.net/projects/genseedhmm/files/tutorial_files.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/Files%2520for%2520the%2520tutorial/downloadGenSeed-HMMThu, 12 Nov 2015 01:27:03 -0000http://sourceforge.net/projects/genseedhmm/files/Files%20for%20the%20tutorial/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520Quick%2520Guide%2520and%2520Tutorial%25201.02.pdf/downloadGenSeed-HMMWed, 11 Nov 2015 21:41:01 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20Quick%20Guide%20and%20Tutorial%201.02.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM_Quick_Guide_and_Tutorial_1.02.pdf/downloadGenSeed-HMMWed, 11 Nov 2015 21:40:02 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM_Quick_Guide_and_Tutorial_1.02.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520program%2520version%25201.06/downloadGenSeed-HMMWed, 11 Nov 2015 21:39:02 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20program%20version%201.06/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadGenSeed-HMMWed, 11 Nov 2015 21:38:03 -0000http://sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadhttps://sourceforge.net/p/genseedhmm/code/ci/6928effa69a374e8625ab294625c27d19b5c5432/Fix in assembler name checking.jotalvesWed, 11 Nov 2015 19:21:49 -0000https://sourceforge.net/p/genseedhmm/code/ci/6928effa69a374e8625ab294625c27d19b5c5432/https://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520Quick%2520Guide%2520and%2520Tutorial.pdf/downloadGenSeed-HMMWed, 11 Nov 2015 18:37:02 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20Quick%20Guide%20and%20Tutorial.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM_Quick_Guide_and_Tutorial_1.01.pdf/downloadGenSeed-HMMTue, 10 Nov 2015 21:20:02 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM_Quick_Guide_and_Tutorial_1.01.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM_Quick_Guide_and_Tutorial.pdf/downloadGenSeed-HMMMon, 09 Nov 2015 20:56:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM_Quick_Guide_and_Tutorial.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Quick_Guide_and_Tutorial.pdf/downloadGenSeed-HMMMon, 09 Nov 2015 20:55:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Quick_Guide_and_Tutorial.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520-%2520Quick%2520Guide%2520and%2520Tutorial.pdf/downloadGenSeed-HMMMon, 09 Nov 2015 20:53:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20-%20Quick%20Guide%20and%20Tutorial.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Quick_Guide_and_Tutorial.pdf/downloadGenSeed-HMMMon, 09 Nov 2015 20:39:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Quick_Guide_and_Tutorial.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520-%2520Quick%2520Guide%2520and%2520Tutorial/downloadGenSeed-HMMMon, 09 Nov 2015 20:38:02 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20-%20Quick%20Guide%20and%20Tutorial/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Quick_Guide_and_Tutorial.pdf/downloadGenSeed-HMMMon, 09 Nov 2015 20:37:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Quick_Guide_and_Tutorial.pdf/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/tutorial_files.tgz/downloadGenSeed-HMMSun, 08 Nov 2015 10:00:02 -0000http://sourceforge.net/projects/genseedhmm/files/tutorial_files.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/Files%2520for%2520the%2520tutorial/downloadGenSeed-HMMSun, 08 Nov 2015 09:52:09 -0000http://sourceforge.net/projects/genseedhmm/files/Files%20for%20the%20tutorial/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/tutorial.tgz/downloadGenSeed-HMMSun, 08 Nov 2015 02:32:02 -0000http://sourceforge.net/projects/genseedhmm/files/tutorial.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520program%2520version%25201.05/downloadGenSeed-HMMTue, 03 Nov 2015 13:13:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20program%20version%201.05/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520program%2520version%25201.04/downloadGenSeed-HMMMon, 02 Nov 2015 19:30:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20program%20version%201.04/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadGenSeed-HMMMon, 02 Nov 2015 19:29:05 -0000http://sourceforge.net/projects/genseedhmm/files/genseed-hmm.pl/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%2520-%2520Quick%2520Guide/downloadGenSeed-HMMMon, 02 Nov 2015 19:27:03 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed-HMM%20-%20Quick%20Guide/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Tutorial%2520v1_quick_guide.pdf/downloadGenSeed-HMMMon, 02 Nov 2015 19:23:02 -0000http://sourceforge.net/projects/genseedhmm/files/GenSeed_HMM_Tutorial%20v1_quick_guide.pdf/downloadhttps://sourceforge.net/p/genseedhmm/code/ci/58ab87031390d11025ef605f2fac17a1393c6dd9/Changed parameter -next_seed_size to -ext_seed_...jotalvesTue, 20 Oct 2015 21:06:39 -0000https://sourceforge.net/p/genseedhmm/code/ci/58ab87031390d11025ef605f2fac17a1393c6dd9/https://sourceforge.net/p/genseedhmm/code/ci/e2520d97f27edf38fd4036da7ef59187cc88060e/Die on bad command-line option; Fixed unclosed ...jotalvesMon, 05 Oct 2015 16:41:59 -0000https://sourceforge.net/p/genseedhmm/code/ci/e2520d97f27edf38fd4036da7ef59187cc88060e/https://sourceforge.net/p/genseedhmm/code/ci/250b6571b2eb38dd45cc8671d7106be3e26f6555/Fixes in temp file or dir deletion, and use of ...jotalvesFri, 02 Oct 2015 17:56:24 -0000https://sourceforge.net/p/genseedhmm/code/ci/250b6571b2eb38dd45cc8671d7106be3e26f6555/https://sourceforge.net/p/genseedhmm/code/ci/d928430516ea1c6ec96618fa4b7bab6304e7f347/Fixes in handling of quality use parameterjotalvesWed, 15 Jul 2015 21:17:55 -0000https://sourceforge.net/p/genseedhmm/code/ci/d928430516ea1c6ec96618fa4b7bab6304e7f347/https://sourceforge.net/p/genseedhmm/code/ci/53e0c80bf796f37b369e13de4f49a22c199caa25/Initial commit of GenSeed-HMMjotalvesWed, 15 Jul 2015 19:40:17 -0000https://sourceforge.net/p/genseedhmm/code/ci/53e0c80bf796f37b369e13de4f49a22c199caa25/