Showing 300 open source projects for "python data analysis"

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    R packages (maintained by YJLEE)

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).
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    Downloads: 35 This Week
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  • 2
    Parallel and Distributed Process System

    Parallel and Distributed Process System

    NOTICE OF CONSOLIDATION & PARTNERSHIP PENDING As of April 2026, the 20

    NOTICE OF CONSOLIDATION & PARTNERSHIP PENDING As of April 2026, the 20 pipelines of the QCAUS/PDPBioGen suites are undergoing consolidation for high-scale institutional research. Core 'Ford 2026' algorithms remain the proprietary IP of the Ford Peace and Justice Foundation. Academic users at partner institutions are currently performing validation; all other commercial inquiries must contact the author Computational Neuroscience: Large-scale neural population dynamics, brain-inspired...
    Downloads: 11 This Week
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  • 3
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 0 This Week
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  • 4
    PlateEditor

    PlateEditor

    PlateEditor, a free web application to work with multi-well plates

    PlateEditor is a free web application to work with multi-well plates, from creation of layouts to data visualization and aggregation. It is primarily designed as a tool to help scientists working in the field of biology to simplify and fasten the process of data analysis. It is fully client-side: files are never transferred to the server, ensuring complete security and privacy of research data. It doesn't require any installation. - PlateEditor is available at this address: https://plateeditor.sourceforge.io - The source code is also available on GitHub, visit: https://github.com/vindelorme/PlateEditor More information about the source code and the API are available there (the wiki is still under construction, thanks for your patience!) ...
    Downloads: 1 This Week
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  • 5
    qvge

    qvge

    Qt Visual Graph Editor

    ...Its main goal is to make possible visually edit two-dimensional graphs in a simple and intuitive way. Please note that qvge is not a replacement for such a software like Gephi, Graphvis, Dot, yEd, Dia and so on. It is neither a tool for "big data analysis" nor a math application. It is really just a simple graph editor :)
    Downloads: 11 This Week
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  • 6
    DocWire SDK

    DocWire SDK

    Award-winning modern data processing SDK in C++20

    DocWire SDK, a standout C++20AI driven data processing tool, has received award from SourceForge and strong backing from Microsoft. It handles nearly 100 file types, empowering efficient text extraction, web data extraction, and document analysis. For businesses, the shift to DocWire SDK signifies a leap forward. It promises comprehensive document format support and the ability to extract valuable insights from email boxes, databases, and websites using cutting-edge AI. ...
    Downloads: 7 This Week
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  • 7

    MTTK Open BI

    A user-friendly lightweight BI tool.

    A user-friendly lightweight BI tool. It is a set of plugins of MTTK Lowcode Engine, so the user manual and develop manual are combined together with MTTK Low Code Engine. Code repository: https://github.com/jamie-mttk/mttk-lowcode-designer Online demo available at http://139.129.210.30:8825 (First visit may be slow) Username: admin Password: 123456 Lightweight No data processing engine offered, all the data processing depends on the target Databse Server. Easy to use For...
    Downloads: 0 This Week
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  • 8
    FlowViewer

    FlowViewer

    FlowViewer is a web-based netflow data analysis tool.

    FlowViewer provides a convenient web-based user interface to Mark Fullmer’s flow-tools suite and CMU's netflow data capture/analyzer, SiLK. The inclusion of the underlying SiLK tool set enables FlowViewer users to continue to use the tool with the newer IPFIX netflow data protocol, which includes support for IPv6 and Cisco's v9 and FNF netflow. FlowViewer has been developed for NASA’s Earth Sciences Data and Information System (ESDIS) networks, and credit goes to NASA for their usual...
    Downloads: 3 This Week
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  • 9

    Python Laboratory Operations Toolkit

    many useful snippets for using python in a laboratory

    A toolkit of Python software useful in a laboratory data acquisition and analysis environment. Includes support for such protocols as VXI-11 (and its extension, LXI), Vernier LabPro (now very old), and National Instruments DSTP (now very old). Also includes data analysis and modelling tidbits. Python3 updates are on the way in the very near future for the biggest packages. the vxi11 package is fully up-to-date, although see the blog post about python 3.13
    Downloads: 0 This Week
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  • 10
    123VCF

    123VCF

    An Intuitive and Efficient Tool for VCF file filtration

    123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand. It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
    Downloads: 2 This Week
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  • 11

    Glove

    Data analysis tool

    Glove provides an interface to data acquisition systems, sophisticated (and correct) statistical analysis, a plotting tool, and the ability to easily manipulate the data. Its modular design allows plug-ins for acquisition, manipulation, and analysis. ChangeLog: http://glove.sourceforge.net/ChangeLog.html
    Downloads: 0 This Week
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  • 12
    DataMelt

    DataMelt

    Computation and Visualization environment

    DataMelt (or "DMelt") is an environment for numeric computation, data analysis, computational statistics, and data visualization. This Java multiplatform program is integrated with several scripting languages such as Jython (Python), Groovy, JRuby, BeanShell. DMelt can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. ...
    Downloads: 2 This Week
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  • 13
    Gephi

    Gephi

    Gephi the open graph Viz platform

    Gephi is the leading visualization and exploration software for all kinds of graphs and networks. Gephi is open-source and free. Gephi is an award-winning open-source platform for visualizing and manipulating large graphs. It runs on Windows, Mac OS X and Linux. Localization is available in English, French, Spanish, Japanese, Russian, Brazilian Portuguese, Chinese, Czech and German. Fast Powered by a built-in OpenGL engine, Gephi is able to push the envelope with very large networks....
    Downloads: 24 This Week
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  • 14
    GXSM

    GXSM

    Scanning Probe Microscopy Controller and Data Visualization Software

    GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured. High-Speed external PAC-PLL hardware option with digital DSP link.
    Downloads: 4 This Week
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  • 15
    CSI-Math-Notation-PostfixInfix

    CSI-Math-Notation-PostfixInfix

    Perl Lib Math Notation

    ... - The library provide: - Convert INFIX expressions to POSTFIX; - Convert POSTFIX expressions to INFIX and; - Perform POSTFIX context validations. - Context validation can be implemented in item selection routines or data context validation, when it is possible to identify data to be selected or ignored in some data analysis process. * NOTE: - Before any implementation, we recommend details in WIKI (https://sourceforge.net/p/csi-math-notation-postfixinfix/wiki/) or the CPAN Perl Modules, see: https://metacpan.org/pod/Math::Notation::PostfixInfix * Support: The Support Service is FREE. ...
    Downloads: 0 This Week
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  • 16
    PyNanoLab

    PyNanoLab

    data analysis and Visualization with matplotlib

    PyNanoLab contains a variety of tools to complete the data analysis, statistics, curve fitting, and basic machine learning application. Visualization in pynanolab is based on matplotlib. The setup tools is desinged to control and set-up all the details of the figure with a GUI.
    Downloads: 0 This Week
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  • 17
    Wooey

    Wooey

    A Django app that creates automatic web UIs for Python scripts

    ...Enable the easy wrapping of any program in simple python instead of having to use language specific to existing tools such as Galaxy. Enable fellow lab members with no command line experience to utilize python scripts. Autodocument workflows for data analysis (simple model saving).
    Downloads: 0 This Week
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  • 18
    hui

    hui

    hewies user interface - 3D scientific visualisation tool

    Python project with goal to provide FOSS library to extract, analyse and visualise data in a 3D fashion. The instance will connect to a data source, ods sheet, csv, sql DB, pyodbc the instance will analyse and/or transform the data to be presented to the visualisation functionality the instance will visualise the data in a 3D fashion, likely using third party FOSS
    Downloads: 0 This Week
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  • 19
    rocket-bi

    rocket-bi

    An open-source web-based self-service BI for analytical databases

    Rocket.BI is a free, open-source, web-based business intelligence solution specifically designed for analytical databases. It enables data analysts and business users alike to easily integrate different data sources, perform advanced data analysis, ad hoc, and more. With an easy-to-use editor, you can create personalized reports, build interactive business dashboards and generate actionable business insights. Rocket.BI also allows collaboration as working together with other people in the organization.
    Downloads: 0 This Week
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  • 20
    Log4jScanner

    Log4jScanner

    A log4j vulnerability filesystem scanner and Go package

    log4jscanner is a filesystem scanner and Go package that helps organizations quickly identify vulnerable Log4j components inside JARs and shaded dependencies. Instead of probing networks, it walks directories and archives, including nested JARs, to find version fingerprints and risky classes associated with the Log4Shell family of issues. The focus on static analysis makes it suitable for container images, build artifacts, and offline systems where active scanning isn’t feasible. Clear,...
    Downloads: 5 This Week
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  • 21
    SciDAVis is a user-friendly data analysis and visualization program primarily aimed at high-quality plotting of scientific data. It strives to combine an intuitive, easy-to-use graphical user interface with powerful features such as Python scriptability.
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    Downloads: 2,358 This Week
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  • 22

    EZStacking

    EZStacking is Jupyter notebook generator for machine learning

    EZStacking is Jupyter notebook generator for supervised learning problems using Scikit-Learn pipelines and stacked generalization. EZStacking handles classification and regression problems for structured data. It can also be viewed as a development tool, because a notebook generated with EZStacking contains: -an exploratory data analysis (EDA) used to assess data quality - a modelling producing a reduced-size stacked estimator - a server returning a prediction, a measure of the quality of input data and the execution time.
    Downloads: 0 This Week
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  • 23

    MS-Helios

    MS-Helios: A Circos wrapper to visualize multi-omic datasets

    Advances in high-resolution mass spectrometry facilitate the identification of hundreds of metabolites, thousands of proteins and their post-translational modifications. This remarkable progress poses a challenge to data analysis and visualization, requiring methods to reduce dimensionality and represent the data in a compact way. To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and extensive knowledge of the Perl-based tool, Circos. We present MS-Helios, an easy to use command line tool with multiple built-in data processing functions, allowing non-expert users to construct CPMs or in general terms circular plots with a non-genomic basis. ...
    Downloads: 0 This Week
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  • 24
    StreamAlert

    StreamAlert

    StreamAlert is a serverless, realtime data analysis framework

    ...Secure by design, least-privilege execution, containerized analysis, and encrypted data storage.
    Downloads: 0 This Week
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  • 25
    AlphaPlot

    AlphaPlot

    Interactive scientific graphing and data analysis software.

    Alpha Plot can generate different types of 2D and 3D plots (such as line, scatter, bar, pie, and surface plots) from data that is either imported from ASCII files, entered by hand, or calculated using formulas. The data is held in spreadsheets which are referred to as tables with column-based data (typically X and Y values for 2D plots) or matrices (for 3D plots). The spreadsheets as well as graphs and note windows are gathered in a project and can be organized using folders. ...
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    Downloads: 46 This Week
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