Search Results for "mri image matlab code"
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Showing 29 open source projects for "mri image matlab code"
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Image Fusion
Deep Learning-based Image Fusion: A Survey
This repository is a survey / code collection centered on deep learning–based image fusion (e.g. fusing infrared + visible light images, multi-modal fusion) methods. It catalogs many fusion algorithms (e.g. DenseFuse, FusionGAN, NestFuse, etc.), links to code implementations, and describes evaluation metrics. The repository includes a “General Evaluation Metric” subfolder containing objective fusion metrics. It is not a single monolithic tool, but rather a curated reference and aggregation... -
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Exclusively Dark Image Dataset
ExDARK dataset is the largest collection of low-light images
The Exclusively Dark (ExDARK) dataset is one of the largest curated collections of real-world low-light images designed to support research in computer vision tasks under challenging lighting conditions. It contains 7,363 images captured across ten different low-light scenarios, ranging from extremely dark environments to twilight. Each image is annotated with both image-level labels and object-level bounding boxes for 12 object categories, making it suitable for detection and classification... -
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gptoolbox
Matlab toolbox for Geometry Processing
...It also implements discrete differential geometry operators, geodesic distance computations, and constructive solid geometry operations. Beyond geometry, gptoolbox includes features for quadratic programming, image colorization, and dithering. Most of the functions are pure MATLAB code, requiring only that the toolbox be added to the MATLAB path, while some specialized features depend on external libraries and compiled mex files. -
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iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
...It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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Exposure Correction
Learning multi-scale deep model correcting over- and under- exposed
Exposure_Correction is a research project that provides the implementation for the paper Learning Multi-Scale Photo Exposure Correction (CVPR 2021). The repository focuses on correcting poorly exposed photographs, handling both underexposure and overexposure using a deep learning approach. The method employs a multi-scale framework that learns to enhance images by adjusting exposure levels across different spatial resolutions. This allows the model to preserve fine details while correcting... -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. ... -
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DnCNN
Beyond a Gaussian Denoiser: Residual Learning of Deep CNN
...The repository includes training code (using MatConvNet / MATLAB), demo scripts, pretrained models, and evaluation routines. Single model handling multiple noise levels. -
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VRN
Code for "Large Pose 3D Face Reconstruction
The VRN (Volumetric Regression Network) repository implements the “Large Pose 3D Face Reconstruction from a Single Image via Direct Volumetric CNN Regression” method. Instead of explicitly fitting a 3D model via landmark estimation and deformation, VRN treats the reconstruction task as volumetric segmentation: it learns a CNN to regress a 3D volume aligned to the input image, and then extracts a mesh via isosurface from that volume. The network is unguided (no 2D landmarks as intermediate).... -
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CAM
Class Activation Mapping
This repository implements Class Activation Mapping (CAM), a technique to expose the implicit attention of convolutional neural networks by generating heatmaps that highlight the most discriminative image regions influencing a network’s class prediction. The method involves modifying a CNN model slightly (e.g., using global average pooling before the final layer) to produce a weighted combination of feature maps as the class activation map. Integration with existing CNNs (with light... -
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cnn-for-image-retrieval is a research-oriented project that demonstrates the use of convolutional neural networks (CNNs) for image retrieval tasks. The repository provides implementations of CNN-based methods to extract feature representations from images and use them for similarity-based retrieval. It focuses on applying deep learning techniques to improve upon traditional handcrafted descriptors by learning features directly from data. The code includes training and evaluation scripts that...
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ANDTool
Analysis Nuclei DAB (AND) Tool
...USER MANUAL: see the specific PDF available in the Files section. REQUIREMENTS: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. MAIN CONTACT: Filippo Piccinini (E-mail: filippo.piccinini85@gmail.com) -
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PRMLT
Matlab code of machine learning algorithms in book PRML
...It also requires Statistics Toolbox (for some simple random number generator) and Image Processing Toolbox (for reading image data). The code is extremely compact. Minimizing code length is a major goal. As a result, the core of the algorithms can be easily spotted. Many tricks for speeding up Matlab code are applied (e.g. vectorization, matrix factorization, etc.). Usually, functions in this package are orders faster than Matlab builtin ones (e.g. kmeans). ... -
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ConvNet Burden
Memory consumption and FLOP count estimates for convnets
convnet-burden is a MATLAB toolbox / script collection estimating computational cost (FLOPs) and memory consumption of various convolutional neural network architectures. It lets users compute approximate burdens (in FLOPs, memory) for standard image classification CNN models (e.g. ResNet, VGG) based on network definitions. The tool helps researchers compare the computational efficiency of architectures or quantify resource needs. Estimation of memory consumption (e.g. feature map sizes,... -
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Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
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HashingBaselineForImageRetrieval
Various hashing methods for image retrieval and serves as the baseline
This repository provides baseline implementations of deep supervised hashing methods for image retrieval tasks using PyTorch. It includes clean, minimal code for several hashing algorithms designed to map images into compact binary codes while preserving similarity in feature space, enabling fast and scalable retrieval from large image datasets. -
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time... -
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F-Tracker3D
A software tool for tracking fluorescent cells in 3D
...Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. F-Tracker3D is written in MATLAB (©, The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements: MATLAB 2015a and Image Processing Toolbox 9.2 or later versions. -
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Netvlad
NetVLAD: CNN architecture for weakly supervised place recognition
NetVLAD is a deep learning-based image descriptor framework developed by Relja Arandjelović for place recognition and image retrieval. It extends standard CNNs with a trainable VLAD (Vector of Locally Aggregated Descriptors) layer to create compact, robust global descriptors from image features. This implementation includes training code and pretrained models using the Pittsburgh and Tokyo datasets. -
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aslm
aslm - a slightly modified asl-module
aslm is an object orientated toolbox written in MATLAB. It was developed for common tasks associated with the analysis of arterial spin labeling (ASL) and other MRI data. Portions of the code rely heavily on (or are copied from) SPM (http://www.fil.ion.ucl.ac.uk/spm), marsbar (http://marsbar.sourceforge.net, Matthew Brett et al.), and GIFT (Group ICA of fMRI Toolbox v.1.3, http://mialab.mrn.org/software/gift/ )which are also released under the GNU public licence. ... -
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IBEX_MDA
An open infrastructure software to facilitate radiomics research.
This web page is not guaranteed to have the latest versions. The latest stand-alone version can be downloaded at http://bit.ly/IBEX_MDAnderson The latest source-code version can be downloaded at http://bit.ly/IBEXSrc_MDAnderson IBEX (imaging biomarker explorer) is an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. ... -
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ApproxAdderLib
Library of Approximate Adders
...These MATALB and Verilog models can allow software programmer as well as hardware designers to evaluate their code and design. To the best of our knowledge, this is the first open-source library of approximate adders that facilitates reproducible comparisons and further research and development in this direction across various layers of design abstraction. This work is a result of collaborative effort between Chair for Embedded Systems (CES) at Karlsruhe Institute of Technology (KIT), Germany and Vision Image and Signal Processing (VISpro) Lab at SEECS-NUST, Pakistan. -
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MRI-PDQ:Phase Detection & Quantification
Detect sphere-shaped paramagnetic deposits in MRI datasets
Moved to http://parkermills.github.io/MRI-PDQ/ -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or tailored for processing two-dimensional matrix. ... -
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LS-PIV Supplemental Material
Line-scanning particle image velocimetry for analyzing blood flow data
Line-scanning particle image velocimetry (LS-PIV) is an analytical method to quantify blood velocity data generated by many confocal and two-photon excited fluorescence microscopes. We hope that this method will be of use to the research community! The associated files include Matlab code for LS-PIV and example data-sets of measured blood flow in the cerebral cortex of mouse.
