Search Results for "git:/git.code.sf.net/p/docfetcher/code" - Page 2

...However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive, especially for genome-wide association study (GWAS). To improve the calculation speed without changing the size of the TradPerm p-value, we developed a Monte Carlo permutation (MCPerm) method as an efficient alternative to TradPerm. Methods: MCPerm does not need to shuffle the original genotypes and phenotypes data. It uses Monte Carlo method, employs two-step hypergeometric distribution to generate the random number of genotypes (AA, Aa and aa) in cases and controls.

R Unit test framework R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools

Name: SPA Full name: SNP based pathway analysis Maintainer: jiangyongshuai@gmail.com liuguiyou1981@163.com Language: R package Description: SPA is an R package which can identify disease or phenotype related pathways. Input rs# and GWAS test p-values, you can get the related pathways.

Code to perform network analysis on brain imaging data. Updated code is at https://github.com/aaronab/brain-networks

Open Metaheuristic (oMetah) is a library aimed at the conception and the rigourous testing of metaheuristics (i.e. genetic algorithms, simulated annealing, ...). The code design is separated in components : algorithms, problems and a test report generator

An R script written by Martin Turjak, implementing a newly developed method for evaluating synapomorphy on phylogenetic trees. For details see: http://sourceforge.net/p/synapomorphy

ElicitN uses R and a tcltk gui interface for eliciting a number from an appropriate expert. The code has been modified from it's original version designed specifically for eliciting the number of species on coral reefs from expert taxonomists. For more information please refer to: http://dx.doi.org/10.1016/j.envsoft.2011.11.011 Please also refer to GitHub for a even simpler more recently maintained version of the project: https://github.com/beckyfisher/ElicitN

A simple tool to help you create an R interface for your Java project. Simply annotate the constructors and methods you want to make available and JAnnotateR will produce a working package, complete with documentation generated from javadocs.

Perl code scafflod for the automatic execution of main Next Generation Sequencing data processing and analysis.

Neural Network for physicists. A flexible code in which the user has high control of the network parameters. The code provides a chi^2 cost function. The code accepts user-defined cost function and neuron activation functions.

R2HTML is a package for R, which includes HTML function and methods to output R objects to HTML. Allow for redirection on the fly. A driver for Sweave allows to parse HTML flat files containing R code and to automatically write the corresponding outputs.

Built with R, this code allows the user to simulate the game of basketball. While the main focus is on simulating the NBA, the code provides a framework for simulating other leagues by modifying the default set of rules.

InPUT offers a descriptive and programming language independent format and IoC (Inversion of Control) container for the configuration and design of computer experiments. Code and more info can be found on github: http://github.com/feldob/InPUT

For software developers in domains involving statistical analysis, the "R + Java = Inf" project analyses and enhances the interoperability between the R and Java programming languages. The deliverables are source code, documentation and benchmarks.

VisualR is a (currently) Windows only C++ GUI programming interface to R. It allows creating full featured applications that complelely control R and serves as a GUI programming toolkit that can be controlled from inside R code.

A set of R functions (www.r-project.org) for simple hydrological models, based on linear and non-linear storages, MC simulation and multi-objective evaluation. The code provided here is aimed to be transformed into a proper R package at some point.