Search Results for "written in python" - Page 5
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Showing 216 open source projects for "written in python"
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is... -
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HOPSA, high oxygen pressure sputter automation, is a Python 3 project to control a step wise sample creation Process. Although written for this specific task it is easy to adopt for any experimental task which changes hardware parameters and waits for a specific condition before proceeding. The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator.
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Open Engine Simulation Project
A free software engine simulation tool written in Python and PyQT
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Dedalo
dedalo is a 2d cad drawing software written in python3.
dedalo is a 2d cad drawing software written in python3. It is licensed under the GPLv3. Dedalo features: layers, snaps (endpoint, intersection, midpoint), line, polyline, rectangle, delete, polygon, rectangle, arc, circle, points, text, spline, freehand drawing. Move, scale, rotate, offset, cut, extend, hatch, dimension, copy. English, italian languages SVG read-write. Not all features all fully supported. For more information a user manual is provided(pdf format, italian). -
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pycsw is an OGC CSW server implementation written in Python.
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Pyanpha
A python program to use multiwavelength anomalous surface diffraction
...It enables one to calculate the phases of the structure factors of crystal truncation rods when anomalous scatterers are present in the thin film. Functionality extends to standalone simulations. It was coined pyanpha which is an acronym for PYthon ANomalous PHAsing and it is written in python. -
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Famms is a Python module for applying the method of manufactured solutions (MMS) to PDE simulators written in C/C++, Fortran, and Python.
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LibVsg is a 2D/3D software library with a focus on basic geometric manipulations. It's released under the GNU LGPL. Written for C, it provides support for single and double precision arithmetics. A Python wrapper also comes with the distribution.
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A command line based weather reporting tool written in python. View current weather conditions, extended day forecasts, and station id lookups as reported from weather.com. Customize output via weathergetrc configuration file. Platform independent.
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Construction Takeoff SoftwareStratosphere’s cutting edge cloud platform gives estimators unprecedented freedom to complete takeoffs from anywhere with next generation takeoff and markup tools.
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Plantlore is a botanical occurence database being written in Java. It also has a BIOCASE Provider software based web interface.
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Noisy Channel Simulator
Demonstrate errors in transmission of a file over a noisy channel.
This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any... -
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Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.
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xyz2eps
python command line utility to print xyz-geometry to eps file format.
xyz2eps.py is an command line utility written in Python programing language which prints the geometry from xyz-file directly to the eps-file format. Originally it was designed to study the problems related to grain boundaries in graphene. -
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Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.
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PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.
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DSS student toolbox is an interface created over the Direct Sequential Simulation algorithm created by A. Soares, 2001. It allows you to launch this simulation method using simple tools from a GUI. NOTE: this software development is deprecated. You can perform the same operations in our newest software GEOMS2 (beta release). You can download it here: https://sourceforge.net/projects/geoms2/
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Cute Converter is now part of LibreEngineering suite: http://sourceforge.net/projects/libreeng/
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...It will translate a phrase (via internet) or single word (built-in dictionary.) Has capability to learn new words and is smart enough to find plural and feminine words. Written using Python/GTK under GPL
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Simplified Number Conversion! Convert any number of any radix base (base 2-36) to another number of any radix base. It is written in C, and uses GTK+ for the user interface.
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Protein ALignment Optimiser (PALO) is a script for the selection and alignment of the best combination of transcripts among orthologous genes. PALO is mainly written in Python, although other programming languages are also implemented (R, Perl...).
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Cute Thermowell is now part of LibreEngineering suite: http://sourceforge.net/projects/libreeng/
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This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress
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Gaphor is a UML modeling environment written in Python. Gaphor is small and very extensible. The repository is located at http://github.com/gaphor/gaphor.
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Sempy is a Python package for the solution of partial differential equations using the spectral element method.
