| 119 |
mimodd reheader bug with renaming ref sequences in BAM |
0.2 |
open |
Wolfgang Maier
|
2020-10-30
|
2020-10-30
|
|
| 118 |
variant call tool should expose more samtools/bcftools options |
0.2 |
open |
Wolfgang Maier
|
2020-05-25
|
2020-05-25
|
|
| 117 |
First-class sanitize tool |
0.2 |
open |
Wolfgang Maier
|
2020-05-14
|
2020-05-14
|
|
| 113 |
Report Variants Galaxy wrapper should generate plain html datasets |
0.2 |
open |
Wolfgang Maier
|
2019-03-18
|
2019-03-18
|
|
| 111 |
handle freebayes-generated vcfs |
0.2 |
open |
Wolfgang Maier
|
2019-03-14
|
2019-03-14
|
|
| 110 |
offer mapped reads postprocessing |
0.2 |
open |
Wolfgang Maier
|
2019-03-14
|
2019-03-14
|
|
| 109 |
sample dropdown select menus |
0.2 |
open |
Wolfgang Maier
|
2019-03-14
|
2019-03-14
|
|
| 108 |
teach tool wrappers about GALAXY_MEMORY_MB |
0.2 |
open |
Wolfgang Maier
|
2018-03-27
|
2019-03-14
|
|
| 106 |
explore ways to make bam SQ names override ref names during variant calling |
0.2 |
open |
Wolfgang Maier
|
2018-01-23
|
2018-03-17
|
|
| 105 |
enable deletion calling for only some of the samples in a BCF file |
0.3 |
open |
Wolfgang Maier
|
2018-01-23
|
2019-03-14
|
|
| 104 |
allow variant calling for subsets of samples |
0.2 |
open |
Wolfgang Maier
|
2018-01-23
|
2018-03-17
|
|
| 103 |
fix covstats tool treatment of positions with zero-coverage in all samples |
0.2 |
open |
Wolfgang Maier
|
2018-01-23
|
2018-03-19
|
|
| 101 |
make annotate tool robust against very verbose snpEff output |
0.2 |
open |
Wolfgang Maier
|
2017-12-01
|
2019-03-14
|
|
| 96 |
varreport functionality outline |
0.2 |
open |
Wolfgang Maier
|
2017-04-17
|
2019-03-14
|
|
| 90 |
convert and split vcf/bcf files |
0.3 |
open |
Wolfgang Maier
|
2016-07-04
|
2019-03-14
|
|
| 87 |
extend covstats tool |
0.3 |
open |
Wolfgang Maier
|
2016-06-16
|
2019-03-14
|
|
| 85 |
look into supporting Windows via Docker |
0.3 |
open |
Wolfgang Maier
|
2016-02-03
|
2018-03-17
|
|
| 84 |
add anno_links to vectorbase |
0.3 |
open |
Wolfgang Maier
|
2016-02-02
|
2019-03-14
|
|
| 80 |
remove snap-batch tool |
0.3 |
open |
Wolfgang Maier
|
2016-01-28
|
2020-05-14
|
|
| 79 |
replace Galaxy List Installed SnpEff genomes tool |
0.3 |
pending |
Wolfgang Maier
|
2016-01-28
|
2018-03-17
|
|
| 78 |
new RVD (relative variant density) mode for map tool |
0.3 |
open |
Wolfgang Maier
|
2016-01-25
|
2019-03-14
|
|
| 76 |
variant filtering mini-language to allow for OR-based filters |
0.3 |
open |
Wolfgang Maier
|
2015-11-17
|
2020-05-14
|
|
| 75 |
upgrade pysam to 0.9.x and htslib/samtools to 1.5 |
0.2 |
open |
Wolfgang Maier
|
2015-11-11
|
2017-06-23
|
|
| 73 |
batch-level command line options for snap-batch |
0.3 |
open |
Wolfgang Maier
|
2015-10-14
|
2020-05-14
|
|
| 72 |
make pysamtools functions return running processes that can be waited for |
0.3 |
open |
Wolfgang Maier
|
2015-10-14
|
2019-03-14
|
|
