CollagenFinder

CollagenFinder (CF) is a software tool for searching CLP sequences in the given nucleotide sequence. CF scans nucleotide sequence in all six possible reading frames. The additional filter procedures provide more accurate CLP prediction:
- detecting for a tryptophan residue and stop-codons and removing corresponding CLPs,
- cutoff value by GXY repeat number. If we need CLP with length 36 and more we should use cutoff value equal to 4.

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License

Academic Free License (AFL)

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Additional Project Details

User Interface

Command-line

Programming Language

Perl

Database Environment

Perl DBI/DBD

Related Categories

Perl Email Software

Registered

2012-05-29

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