Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function.
Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits.
Spatial autocorrelation. Moran's index.
Isolation by distance. Exponential regression. Correlation Fst/Distance.
Centroid method.
Cline's expected vs. predicted heterozygosity.
MDS. Sammon projection.
Geographical distances. Fst distances.
Export data to Arlequin, Phylip, Past and Poptree.
User-friendly input data.

Features

  • Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function.
  • Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination.
  • Graphical representation of the cline. Confidence limits.
  • Spatial autocorrelation. Moran's index. Isolation by distance. Exponential regression. Correlation Fst/Distance. Centroid method. Cline's expected vs. predicted heterozygosity. MDS. Sammon projection. Geographical distances. Fst distances.
  • Export data to Arlequin, Phylip, Past and Poptree.
  • User-friendly input data.

Project Samples

GenoCline 1. Cover page GenoCline 2. Radar graph of clines GenoCline 3. A linear cline GenoCline 4. Autocorrelogram GenoCline 5. Isolation by distance GenoCline 6. A sigmoid cline

Project Activity

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Categories

Ecosystem Sciences

License

Creative Commons Attribution License

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GenoCline Web Site

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Additional Project Details

Intended Audience

Education, Science/Research

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Ecosystem Sciences Software

Registered

2015-07-14
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