Hetionet is a hetnet — network with multiple node and edge (relationship) types — which encodes biology. The hetnet was designed for Project Rephetio, which aims to systematically identify why drugs work and predict new therapies for drugs. The JSON and Neo4j formats contain node and edge properties, which are absent in the TSV and matrix formats, including licensing information. Therefore the recommended formats are JSON and Neo4j. Our hetio package in Python reads the JSON format, but it is otherwise a simple yet new format. The Neo4j graph database has an established and thriving ecosystem. However, if you would like to access Hetionet without Neo4j, then we suggest the JSON format. The matrix format refers to HetMat archives, which store edge adjacency matrices on disk. Additional usage information is available at the corresponding download locations.

Features

  • Systematic integration of biomedical knowledge prioritizes drugs for repurposing
  • Permuted Hetnets
  • Large files in this repository are stored using Git LFS
  • describe contains summary statistics on the hetnet
  • Network with multiple node and edge (relationship) types
  • The hetnet was designed for Project Rephetio

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Categories

Data Integration

License

MIT License

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Programming Language

Unix Shell

Related Categories

Unix Shell Data Integration Tool

Registered

2023-06-12
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