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MCScanX is a toolkit for detecting gene synteny and collinearity, aiding in the evolutionary analysis of gene arrangements across multiple genomes. It extends the original MCScan algorithm by incorporating additional utilities for visualization and downstream analyses.
Features
- Detects syntenic blocks and collinear gene arrangements
- Supports analysis across multiple genomes or subgenomes
- Includes visualization tools for synteny maps
- Provides utilities for evolutionary analysis
- Facilitates identification of gene duplication events
- Offers command-line tools for batch processing
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BSD LicenseFollow MCScanX
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