A tool to compare microbial genomes by their sequence fragments. We redistributed the Bioperl package in our software for convenience purpose. The latest Bioperl package can be downloaded from: http://www.bioperl.org.
System Requirement:
Java Runtime Environment 1.6.0 or above;
Perl 5.0 or above
If you have any difficulties to run this tool, just let me know by chenh12@nyumc.org.
Features
- Compare two groups of genomes to find non-matching sequences between them
- Find repeated sequences inside one genome
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