MutaNET

MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance.

Features

NGS variant calling pipeline
automated mutation analysis
gene regulatory network analysis
define genes of interest
coding region mutations
transcription factor binding side mutations
protein domain mutations
file format converters

Project Samples

MutaNET flowchart and antibiotic resistance mutations in gene regulatory network of E. coli

multidrug resistance efflux pump mutations in S. areus antibiotic resistance gene regulatory network

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Cygwin, Linux, Mac, Windows

Languages

English

Intended Audience

Healthcare Industry, Science/Research

Programming Language

Python

Related Categories

Python Bio-Informatics Software, Python Medical Software

Registered

2017-07-26

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