NUCPOS

Suite for analysis of genome-wide nucleosome positions

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Last Update: 2015-09-16

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NUCPOS is a suite of utilities for the analysis of genome-wide nucleosome positions. The suite is currently composed of 5 programs:

nucfrag
dyad_bins
align_dyads
dinucleotide_frequencies
hp_fft

The analysis starts with the SAM format alignment file generated by an alignment program such as Bowtie2. All utilities are coded in C++ 11, and can easily be modified to use any available genome sequence.

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