PB-sQF_BacterialTyping download

Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain.
The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/).
The download included the library index, the library name and sample unknowns.

Features

Calculating test statistics between library and unknown k-mer frequency
Bacterial sequence typing
Windows
Mac

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Programming Language

MATLAB

Related Categories

MATLAB Bio-Informatics Software

Registered

2016-10-09

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