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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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GNU Library or Lesser General Public License version 3.0 (LGPLv3)Follow Read Analysis n Comparison Kit in Java
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