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SBEToolbox (Systems Biology and Evolution Toolbox) is being developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network. Some of its features include (but not limited to) algorithms to create random networks (small-world, ring lattice etc..), deduce clusters in the network (MCL, mCode, clusterOne) etc...
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PROJECT MIGRATED TO GITHUB FOR FUTURE UPDATES: https://github.com/biocoder/SBEToolbox/releases
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Reference ( In Press ):
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Konganti K, Wang G, Yang E, Cai JJ* (2013). SBEToolbox: a Matlab toolbox for biological network analysis. Evolutionary Bioinformatics, 8:1-15
Features
- Create random networks (Small World, Erdös - Rényi, Ring Lattice)
- Import network information in various formats such as SIF, PAJEK and TAB delimited
- Get various statistics about the current network of interest (Degree Centrality etc...)
- View networks using Protovis add on or using Cytoscape
- Apply different algorithms (MCL, mCode, clusterOne) for module detection
- Extract largest connected network
Project Samples
