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Seurat is a comprehensive R toolkit for single-cell genomics analysis, introduced by the Satija Lab at NYGC. It supports quality control, normalization, clustering, integration of multimodal data (e.g., scRNA‑seq, spatial, CITE‑seq), and visualization. Seurat v5 introduces scalable workflows and spatial transcriptomics support, commonly used in academic and industry research for single-cell studies.
Features
- Quality control and normalization pipelines for scRNA-seq
- Dimensional reduction, clustering, and cell-type annotation
- Integration across samples and modalities
- Spatial transcriptomics analysis and visualization
- Handles large-scale datasets efficiently (v5 scalability)
- Extensive vignettes, tutorials, and integration with Bioconductor
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Scientific/EngineeringLicense
MIT LicenseFollow Seurat
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