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Showing 21 open source projects for "python data analysis"
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Pyright
Static type checker for Python
Pyright is a fast type checker meant for large Python source bases. It can run in a “watch” mode and performs fast incremental updates when files are modified. Pyright supports configuration files that provide granular control over settings. Different “execution environments” can be associated with subdirectories within a source base. Each environment can specify different module search paths, python language versions, and platform targets. Type inference for function return values, instance... -
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PDF4QT
Open source PDF editor
PDF4QT is open source PDF editor based on Qt framework. It contains a C++ library, applications for viewing/editing PDF documents, and a command line tool. PDF4QT is an open-source PDF editor for Windows/Linux. It is a modern solution for viewing/editing/rendering PDF documents, for users and developers alike. For developers, there is a C++ library and a command line tool for use in scripts. For users, there are four applications offering many features. The project is hosted on Github and... -
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HTTPie CLI
Modern, user-friendly command-line HTTP client for the API era
HTTPie (pronounced aitch-tee-tee-pie) is a command-line HTTP client. Its goal is to make CLI interaction with web services as human-friendly as possible. HTTPie is designed for testing, debugging, and generally interacting with APIs & HTTP servers. The HTTP & HTTPS commands allow for creating and sending arbitrary HTTP requests. They use simple and natural syntax and provide formatted and colorized output. -
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GAM
Command line management for Google Workspace
GAM is a command line tool that allows administrators to manage many aspects of their Google Workspace (formerly G Suite / Google Apps) Account. This page provides simple instructions for downloading, installing and starting to use GAM. GAM requires paid (or Education/non-profit) editions of Google Workspace. G Suite Legacy Free Edition has limited API support and not all GAM commands work. While many GAM functions do not require domain administrative privileges, the setup does. Download... -
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aws-cli
Universal Command Line Interface for Amazon Web Services
The AWS CLI is the universal command-line interface for managing AWS services, automating tasks, and scripting cloud workflows. It exposes nearly every public API from EC2 and S3 to IAM, Lambda, and beyond, providing parity with the service SDKs in a tool you can run anywhere. Profiles, regions, single-sign-on, and credential helpers make it straightforward to switch contexts securely across accounts and environments. Its output controls and JMESPath querying let you slice, filter, and... -
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PAL MCP
The power of Claude Code / GeminiCLI / CodexCLI
PAL MCP is an open-source Model Context Protocol (MCP) server designed to act as a powerful middleware layer that connects AI clients and tools—like Claude Code, Codex CLI, Cursor, and IDE plugins—to a broad range of underlying AI models, enabling collaborative multi-model workflows rather than relying on a single model. It lets developers orchestrate interactions across multiple models (including Gemini, OpenAI, Grok, Azure, Ollama, OpenRouter, and custom/self-hosted models), preserving... -
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cheat.sh
The only cheat sheet you need
...You can query it from the terminal (for example curl cht.sh/rsync or curl cheat.sh/ls) or browse the web front page; it also supports a shorthand hostname (cht.sh) and provides both online and standalone/local installation modes. The repository contains the server and client code, instructions to run a local standalone instance (including Python virtualenv setup), and tooling to fetch or maintain the upstream cheat-sheet data; installation documentation explains disk-space needs and dependency setup for offline use. Cheat.sh is intentionally minimal and scriptable, so it fits naturally into shells, CI scripts, editors, and quick lookups without leaving the terminal, while also offering ways to extend or host personal cheat sheets. -
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csv2odf
csv2odf can convert csv data to formatted spreadsheets and documents.
...It can be used to create spreadsheets and documents for LibreOffice, OpenOffice, Microsoft Office Excel and Word. It is open source GPL v3 and crossplatform, it can run on most operating systems that can run Python (Python is required). More details, example files, and online manual at http://csv2odf.sf.net. -
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S3cmd
Command line tool for managing Amazon S3 and CloudFront services
S3cmd (s3cmd) is a free command line tool and client for uploading, retrieving and managing data in Amazon S3 and other cloud storage service providers that use the S3 protocol, such as Google Cloud Storage or DreamHost DreamObjects. It is best suited for power users who are familiar with command-line programs. It is also ideal for batch scripts and automated backup to S3, triggered from cron, etc. S3cmd is written in Python. -
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Manticore
Symbolic execution tool
Manticore helps us quickly take advantage of symbolic execution, taint analysis, and instrumentation to analyze binaries. Parts of Manticore underpinned our symbolic execution capabilities in the Cyber Grand Challenge. As an open-source tool, we hope that others can take advantage of these capabilities in their own projects. We prioritized simplicity and usability while building Manticore. We used minimal external dependencies and our API should look familiar to anyone with exploitation or... -
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MS-Helios
MS-Helios: A Circos wrapper to visualize multi-omic datasets
Advances in high-resolution mass spectrometry facilitate the identification of hundreds of metabolites, thousands of proteins and their post-translational modifications. This remarkable progress poses a challenge to data analysis and visualization, requiring methods to reduce dimensionality and represent the data in a compact way. To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and extensive knowledge of the Perl-based tool, Circos. We present MS-Helios, an easy to use command line tool with multiple built-in data processing functions, allowing non-expert users to construct CPMs or in general terms circular plots with a non-genomic basis. ... -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be... -
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TSA_CRAFT
Automatic command line tool for TSA data analysis
DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily displayed by a web browser. -
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transitfeed
Tools for reading, validating & writing transit schedule info in GTFS
transitfeed helps to make public transit information projects more successful for agencies and other interested parties. It provides a library to help you parse, validate, and generate General Transit Feed Spec (GTFS) feed files. It contains several parts, including TransitFeed (Python package for reading, writing, and validating feeds); Feedvalidator (command line tool that checks a GTFS feed for problems); ScheduleViewer (application for exploring a feed on a map) and more; each with their... -
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation... -
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tags2uml
Generates UML class diagrams, from source code
Generates UML class diagrams, from source code. Please see GitHub page for more info. Command line tool to convert from a Exuberant-ctags tags file to a UML class diagram, through Graphviz, for all object oriented languages supported by ctags The input file is a tags file, generated by Exuberant-ctags using --fields==+latinK. The output file is a Graphviz DOT file whose name is specified through the program options, or to stdout. The DOT file should then be passed to the Graphviz... -
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BCP
NGS analysis tool
BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data. -
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Command-line tool to calculate error propagation. Generates the error formulas and applies them to the data.
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"No comment!" is a command-line tool that generates various comment-related metrics for source code files (e. g. comment density, blank lines per file)
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This is a Python interface for reading and writing Magellan GPS unit map files. There is also a command line tool for creating GPS maps from OpenStreetMap data.
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